Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060493.seq
         (553 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           25   0.44 
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    24   1.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   3.1  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    22   4.1  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   7.2  
AF264718-1|AAF75271.1|  125|Tribolium castaneum putative cytochr...    21   7.2  

>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 439 VYSVDGLDEDIEFGDEVSSEDEAVM 513
           +YS   L  D  FGD+  SED  V+
Sbjct: 199 IYSEQSLSPDTVFGDDGKSEDVPVI 223


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 123 EERTKMKLKNVSWSLRKTDKSTPKSQRC 206
           + RT  +    S + R T ++TP S RC
Sbjct: 275 QRRTHTRHTTTSHNTRGTPRTTPASSRC 302


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 258  SHPRETTKKSVDKSRRHNINR 320
            SHP    +K  DK+  H  NR
Sbjct: 988  SHPLAALQKLCDKTETHTNNR 1008


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -2

Query: 312 YYVSLIYPHFFS 277
           YYV++ +PH F+
Sbjct: 500 YYVNVTFPHLFN 511


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 102 KEEKIGGEERTKMKLKNVSWSLRKTDKSTPK 194
           KEE I  E +   KLK + + +   D+  P+
Sbjct: 151 KEEYISFESKVFHKLKKMKYLVEVQDEVKPR 181


>AF264718-1|AAF75271.1|  125|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q6 protein.
          Length = 125

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 550 NIINKG*XLHIHTSQLH 500
           N I +G  LHIH   LH
Sbjct: 78  NTIPEGTVLHIHIFDLH 94


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,446
Number of Sequences: 336
Number of extensions: 2165
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13621010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)