Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060493.seq
(553 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0256 + 13528331-13528765 110 6e-25
02_02_0566 + 11567415-11567843 106 1e-23
02_05_1082 - 33976038-33978035 36 0.028
04_04_0822 + 28352941-28353825,28353863-28354016,28354714-283547... 31 0.61
11_03_0093 - 9852075-9852871,9852911-9853009,9853208-9853646,985... 30 1.1
06_01_0447 + 3159092-3159543,3159699-3159825,3160640-3161392 29 1.9
07_03_1604 - 28089032-28089079,28089161-28089371,28089484-280898... 29 3.3
05_03_0321 + 12363355-12363614,12363689-12364145,12364165-12365718 29 3.3
02_02_0576 + 11730171-11730466,11733096-11733435,11733530-117337... 29 3.3
05_01_0076 - 517056-517370 28 4.3
04_04_0979 - 29862280-29862444,29862718-29862999,29863831-298639... 28 5.7
01_05_0262 - 20137391-20137861,20137937-20138100,20138140-201382... 28 5.7
04_04_1096 + 30855192-30855225,30856135-30856208,30856293-308564... 27 7.5
04_04_0590 + 26457514-26457801,26458849-26459325,26459817-264600... 27 7.5
04_03_0495 + 16545795-16546029,16546125-16546360,16546863-16547144 27 7.5
03_04_0242 - 19238016-19238679,19239487-19239929 27 10.0
03_01_0156 - 1250251-1250436,1250633-1250674,1250794-1250835,125... 27 10.0
>06_02_0256 + 13528331-13528765
Length = 144
Score = 110 bits (265), Expect = 6e-25
Identities = 53/85 (62%), Positives = 63/85 (74%)
Frame = +1
Query: 256 CHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPETVRINET 435
CHIRGK+ KKVWI GDIIL+GLRDYQD KADVILKY DEAR LK YGE P+T+R+NE
Sbjct: 59 CHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMNDEARLLKAYGELPDTLRLNEG 118
Query: 436 VVYSVDGLDEDIEFGDEVSSEDEAV 510
V VDG ++ + D + EDE +
Sbjct: 119 V--DVDGPEDGGDHDDYIQFEDEDI 141
Score = 64.9 bits (151), Expect = 4e-11
Identities = 30/43 (69%), Positives = 32/43 (74%)
Frame = +2
Query: 158 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRRVTSEGNYEKK 286
LVFKEDGQEYAQVT+MLGNGR EA+C DG KR G KK
Sbjct: 26 LVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCHIRGKMHKK 68
>02_02_0566 + 11567415-11567843
Length = 142
Score = 106 bits (255), Expect = 1e-23
Identities = 52/79 (65%), Positives = 59/79 (74%), Gaps = 2/79 (2%)
Frame = +1
Query: 256 CHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPETVRINET 435
CHIRGK+ KKVWI GDI+L+GLRDYQD KADVILKY DEAR LK YGE P+ VR+NE
Sbjct: 59 CHIRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMNDEARLLKAYGEIPDHVRLNEG 118
Query: 436 VVYSVDGL--DEDIEFGDE 486
VV D D+ I+F DE
Sbjct: 119 VVDEDDAAAHDDYIQFEDE 137
Score = 62.9 bits (146), Expect = 2e-10
Identities = 29/43 (67%), Positives = 30/43 (69%)
Frame = +2
Query: 158 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRRVTSEGNYEKK 286
LVFKEDGQEYAQV +MLGNGR EA C DG KR G KK
Sbjct: 26 LVFKEDGQEYAQVARMLGNGRCEAQCIDGTKRLCHIRGKMHKK 68
>02_05_1082 - 33976038-33978035
Length = 665
Score = 35.5 bits (78), Expect = 0.028
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +1
Query: 358 LKYTPDEARNLKTYGEFPETVRINETVVYSVDGLDEDIEFGDEVS 492
+K+ PD+ ++LK YG++P +++ + T V +E I + EVS
Sbjct: 229 IKHNPDDVKSLKMYGKYPRSIKCDPTTVSMSIKENEPIVYTYEVS 273
>04_04_0822 +
28352941-28353825,28353863-28354016,28354714-28354754,
28355060-28355310,28355411-28355591,28356138-28356323,
28356396-28356569,28356992-28357150,28357424-28357501,
28357612-28357748,28357980-28358044,28358115-28358148,
28358216-28358372,28359135-28359196,28360041-28360118,
28360940-28361042
Length = 914
Score = 31.1 bits (67), Expect = 0.61
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 283 KVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPE-TVRINETVVYSVDGL 459
KV + +GD++ LR AD+ + RN ++Y E + +VRI T V+S D +
Sbjct: 244 KVEVEEGDVVGKALRKCARISADLRQELYGSSTRNCESYAEIDDSSVRI-VTQVWSFDSM 302
Query: 460 D 462
D
Sbjct: 303 D 303
>11_03_0093 -
9852075-9852871,9852911-9853009,9853208-9853646,
9853803-9854129
Length = 553
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -1
Query: 262 CDTAFDAIKAHGLQAAITEHLCDLGVLLSVFLKDQLTFFSFIFVLSSP 119
C T +I+AH A LCDLG +SV KD +F + S+P
Sbjct: 406 CPTITCSIRAHQFDRA----LCDLGASVSVMPKDVFDKLNFTVLASTP 449
>06_01_0447 + 3159092-3159543,3159699-3159825,3160640-3161392
Length = 443
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +1
Query: 241 WHQTPCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEARN 387
WH H+R ++K W + DI+LI K I K+ P N
Sbjct: 184 WHN---HLRPNIKKDTWSEEEDIVLIQTHKEVGNKWAEIAKHLPGRTEN 229
>07_03_1604 -
28089032-28089079,28089161-28089371,28089484-28089853,
28090034-28090199
Length = 264
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -1
Query: 202 LCDLGVLLSVFLKDQLTFFSFIFVLSSPPIFS 107
+ L ++L VF+ Q F+F V SSPP+FS
Sbjct: 1 MAPLLLILLVFMPCQTMLFTFDRVTSSPPLFS 32
>05_03_0321 + 12363355-12363614,12363689-12364145,12364165-12365718
Length = 756
Score = 28.7 bits (61), Expect = 3.3
Identities = 21/51 (41%), Positives = 25/51 (49%)
Frame = -1
Query: 265 GCDTAFDAIKAHGLQAAITEHLCDLGVLLSVFLKDQLTFFSFIFVLSSPPI 113
GC T +I A A LCDLG +SV KD F+F VLS P+
Sbjct: 527 GCPTITCSIGAQQFDQA----LCDLGASVSVMPKDVFDKFNFT-VLSPTPM 572
>02_02_0576 +
11730171-11730466,11733096-11733435,11733530-11733748,
11734687-11734746,11734847-11735096,11735314-11735441
Length = 430
Score = 28.7 bits (61), Expect = 3.3
Identities = 8/24 (33%), Positives = 19/24 (79%)
Frame = +1
Query: 445 SVDGLDEDIEFGDEVSSEDEAVMC 516
S+DG+++D++F +++ E+ V+C
Sbjct: 364 SLDGIEDDVDFCSKLAKEESVVIC 387
>05_01_0076 - 517056-517370
Length = 104
Score = 28.3 bits (60), Expect = 4.3
Identities = 22/88 (25%), Positives = 34/88 (38%)
Frame = +3
Query: 78 KTCRKTKVKEEKIGGEERTKMKLKNVSWSLRKTDKSTPKSQRCSVMAAWRPCALMASNAV 257
KTC+ K KE+ GG + K K K +P S PC ++ +
Sbjct: 16 KTCKNLKTKEDAAGGNVAVR---KEQVMKTTKGLKKSPPPPSSSPEQVKMPCRSYSAENI 72
Query: 258 SHPRETTKKSVDKSRRHNINRPTRLSRC 341
H T K ++R + I R ++ C
Sbjct: 73 KHRLTKTVKE-HRARFYIIRRCIQMLIC 99
>04_04_0979 -
29862280-29862444,29862718-29862999,29863831-29863929,
29864037-29864366
Length = 291
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 102 KEEKIGGEERTKMKLKNVSWS 164
+EE+ GGE+R K+ + N+ WS
Sbjct: 70 EEEEEGGEKRRKLYVANIPWS 90
>01_05_0262 -
20137391-20137861,20137937-20138100,20138140-20138220,
20138437-20138614,20138786-20139164,20139183-20139358
Length = 482
Score = 27.9 bits (59), Expect = 5.7
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = -1
Query: 265 GCDTAFDAIKAHGLQAAITEHLCDLGVLLSVFLKDQLTFFSFIFVLSSP 119
GC T +I A A LCDLG +SV KD F+F + +P
Sbjct: 363 GCPTITCSIGAQQFDQA----LCDLGASVSVMPKDIFDKFNFTVLAPTP 407
>04_04_1096 +
30855192-30855225,30856135-30856208,30856293-30856467,
30856842-30856918,30857042-30857279,30857414-30857478,
30857628-30858086,30858253-30858465,30858613-30859002
Length = 574
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 295 NQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPETVRIN 429
NQ D ++ +Y+DAK VI YT D YG + T N
Sbjct: 310 NQHDFVI----EYEDAKFFVIKSYTEDHVHKSIKYGVWASTASGN 350
>04_04_0590 +
26457514-26457801,26458849-26459325,26459817-26460027,
26460219-26460376,26460461-26460531,26460707-26460812,
26460880-26460966,26461591-26462148,26462245-26462308,
26463352-26463485,26463568-26463621,26464321-26464417,
26465620-26465825,26465901-26465984,26466265-26466330,
26466883-26466956,26467664-26467751,26467830-26467928
Length = 973
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 231 MASKRPLPSIFVTWAYSCPSSL 166
M SKR LP++ W Y PS L
Sbjct: 112 MTSKRNLPNLACFWGYKVPSGL 133
>04_03_0495 + 16545795-16546029,16546125-16546360,16546863-16547144
Length = 250
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/68 (22%), Positives = 31/68 (45%)
Frame = +3
Query: 84 CRKTKVKEEKIGGEERTKMKLKNVSWSLRKTDKSTPKSQRCSVMAAWRPCALMASNAVSH 263
C+K ++ I ++ + + + S+S RK +K++ + C PC++ S
Sbjct: 64 CKKDLKTKDDITIQQSARNQHETPSFSTRKCNKNSRFGEDCKNQLQEIPCSIKGSRKKGR 123
Query: 264 PRETTKKS 287
+ KKS
Sbjct: 124 ETKRPKKS 131
>03_04_0242 - 19238016-19238679,19239487-19239929
Length = 368
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 202 LCDLGVLLSVFLKDQLTFFSFIFVLSSP 119
LCDLG +SV LKD +F + +P
Sbjct: 156 LCDLGASVSVMLKDVFDKLNFTVLAPTP 183
>03_01_0156 -
1250251-1250436,1250633-1250674,1250794-1250835,
1250935-1251034,1251125-1251186,1251333-1251356
Length = 151
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 87 RKTKVKEEKIGGEERTKMKLKNVSWSLRKTDKSTP 191
RKTK+ EE++ +MKL+ + LR+ K+ P
Sbjct: 61 RKTKLLEEQVAKLREKEMKLRKDNEELREKCKNQP 95
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,480,267
Number of Sequences: 37544
Number of extensions: 223885
Number of successful extensions: 623
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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