Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060493.seq
         (553 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22379| Best HMM Match : No HMM Matches (HMM E-Value=.)             117   6e-27
SB_11333| Best HMM Match : eIF-1a (HMM E-Value=4.1e-05)                77   1e-14
SB_44194| Best HMM Match : PEGSRP (HMM E-Value=8)                      31   0.47 
SB_3873| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.9  
SB_58298| Best HMM Match : Vicilin_N (HMM E-Value=0.48)                29   3.3  
SB_58556| Best HMM Match : 4F5 (HMM E-Value=5.7)                       28   4.4  
SB_39361| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_39149| Best HMM Match : 4F5 (HMM E-Value=1.2)                       28   4.4  
SB_37404| Best HMM Match : 4F5 (HMM E-Value=5.7)                       28   4.4  
SB_13854| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_45192| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_13429| Best HMM Match : Vicilin_N (HMM E-Value=0.13)                28   4.4  
SB_8396| Best HMM Match : Spb1_C (HMM E-Value=0.65)                    27   7.7  

>SB_22379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score =  117 bits (282), Expect = 6e-27
 Identities = 54/76 (71%), Positives = 61/76 (80%)
 Frame = +1

Query: 256 CHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPETVRINET 435
           CHIRGKLRKKVWIN GDIIL+GLRDYQD KADVIL+Y PDEARNLK YGE PE  +IN+T
Sbjct: 129 CHIRGKLRKKVWINTGDIILLGLRDYQDTKADVILRYNPDEARNLKAYGELPENAKINDT 188

Query: 436 VVYSVDGLDEDIEFGD 483
            ++  +  DE I F D
Sbjct: 189 NMFGPEEEDE-ITFDD 203



 Score = 58.0 bits (134), Expect = 5e-09
 Identities = 26/43 (60%), Positives = 30/43 (69%)
 Frame = +2

Query: 158 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRRVTSEGNYEKK 286
           L+    G+EYAQV KMLGNGRLEA+CFDG+KR     G   KK
Sbjct: 96  LINDRQGEEYAQVVKMLGNGRLEALCFDGMKRLCHIRGKLRKK 138


>SB_11333| Best HMM Match : eIF-1a (HMM E-Value=4.1e-05)
          Length = 72

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 33/40 (82%), Positives = 36/40 (90%)
 Frame = +1

Query: 295 NQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPE 414
           N+GDIIL+GLRDYQD KADVIL+Y PDEARNLK YGE PE
Sbjct: 31  NKGDIILLGLRDYQDTKADVILRYNPDEARNLKAYGELPE 70


>SB_44194| Best HMM Match : PEGSRP (HMM E-Value=8)
          Length = 207

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 5/37 (13%)
 Frame = +3

Query: 225 RPCALMASNA-VSHPR----ETTKKSVDKSRRHNINR 320
           RPCA++ASN+ +S P     + TK+S++ S  HN N+
Sbjct: 166 RPCAIIASNSKISEPATKCFQMTKQSLEDSSSHNSNK 202


>SB_3873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +3

Query: 90  KTKVKEEKIGGEERTKMKLKNVSWSLRKTDKSTPKSQRCSVM 215
           + KV++EK  GEE  K  ++N+    ++ + ++ KS+R   M
Sbjct: 80  RKKVEQEKAKGEEIRKRAMENLEDMKKREESASKKSRRSGAM 121


>SB_58298| Best HMM Match : Vicilin_N (HMM E-Value=0.48)
          Length = 204

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 19/80 (23%), Positives = 35/80 (43%)
 Frame = +3

Query: 84  CRKTKVKEEKIGGEERTKMKLKNVSWSLRKTDKSTPKSQRCSVMAAWRPCALMASNAVSH 263
           CR+   + E++   +RT  +    + + R+ ++  PK+QR +   A   C          
Sbjct: 100 CRR---RNEQLPKAQRTTAE--GATNNCRRRNEQLPKAQRTTAEGATNNCRRRNEQLPKA 154

Query: 264 PRETTKKSVDKSRRHNINRP 323
            R T + + +  RRHN   P
Sbjct: 155 QRTTAEGTTNNCRRHNEQLP 174


>SB_58556| Best HMM Match : 4F5 (HMM E-Value=5.7)
          Length = 215

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +3

Query: 90  KTKVKEEKIGGEERTKMKLKNVSWSLRKTDKSTPKSQRCSVM 215
           K KV++EK  GEE  K  ++ +  + ++ + ++ KS+R   M
Sbjct: 97  KKKVEQEKAKGEEIRKRAMEKLGDTKKREESASKKSRRSGSM 138


>SB_39361| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/75 (22%), Positives = 31/75 (41%)
 Frame = +1

Query: 259 HIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPETVRINETV 438
           HI G+   K  +N G  I I ++D   A A+ + +  P       T  +       ++  
Sbjct: 75  HIHGEESNKFTLNDGHTITIAIQDTPRATAEHLGQVLPGHEAATHTLADIIHNDTSHDDD 134

Query: 439 VYSVDGLDEDIEFGD 483
           + SV   D  ++ G+
Sbjct: 135 MLSVQSTDGTLDLGN 149


>SB_39149| Best HMM Match : 4F5 (HMM E-Value=1.2)
          Length = 148

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +3

Query: 90  KTKVKEEKIGGEERTKMKLKNVSWSLRKTDKSTPKSQRCSVM 215
           K KV++EK  GEE  K  ++ +  + ++ + ++ KS+R   M
Sbjct: 30  KKKVEQEKARGEEIRKRAMEKLGDTKKREESASKKSRRSGSM 71


>SB_37404| Best HMM Match : 4F5 (HMM E-Value=5.7)
          Length = 123

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +3

Query: 90  KTKVKEEKIGGEERTKMKLKNVSWSLRKTDKSTPKSQRCSVM 215
           K KV++EK  GEE  K  ++ +  + ++ + ++ KS+R   M
Sbjct: 5   KKKVEQEKAKGEEIRKRAMEKLGDTKKREESASKKSRRSGSM 46


>SB_13854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 398

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +3

Query: 90  KTKVKEEKIGGEERTKMKLKNVSWSLRKTDKSTPKSQRCSVM 215
           K KV++EK  GEE  K  ++ +  + ++ + ++ KS+R   M
Sbjct: 316 KKKVEQEKAKGEEIRKRAMEKLGDTKKREESASKKSRRSGSM 357


>SB_45192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 634

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 233 TWPPSGHYRASL*LGRTLVRLP*RPTH 153
           TWP    Y+A   LG T + LP  P+H
Sbjct: 106 TWPSPADYQARPTLGNTHITLPQSPSH 132


>SB_13429| Best HMM Match : Vicilin_N (HMM E-Value=0.13)
          Length = 323

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +3

Query: 90  KTKVKEEKIGGEERTKMKLKNVSWSLRKTDKSTPKSQRCSVM 215
           K KV++EK  GEE  K  ++ +  + ++ + ++ KS+R   M
Sbjct: 119 KKKVEQEKAKGEEIRKRAMEKLGDTKKREESASKKSRRSGSM 160


>SB_8396| Best HMM Match : Spb1_C (HMM E-Value=0.65)
          Length = 1007

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 22/79 (27%), Positives = 31/79 (39%)
 Frame = +3

Query: 75  YKTCRKTKVKEEKIGGEERTKMKLKNVSWSLRKTDKSTPKSQRCSVMAAWRPCALMASNA 254
           YK   K    + KI G + +      +  +L KT+    +    S          + SNA
Sbjct: 493 YKGSTKLNTSKPKISGRKSSNQPGAKIKGNLSKTESDVERKTSSSSE------GYVGSNA 546

Query: 255 VSHPRETTKKSVDKSRRHN 311
               R+T KKS  K RR N
Sbjct: 547 SEASRQTQKKS-SKLRRQN 564


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,623,719
Number of Sequences: 59808
Number of extensions: 258658
Number of successful extensions: 690
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)