Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060493.seq
         (553 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF164151-1|AAD47075.1|  148|Anopheles gambiae translation initia...   154   2e-39
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            29   0.13 
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    23   6.7  
AJ304411-1|CAC39104.1|  187|Anopheles gambiae LDL receptor protein.    23   8.8  

>AF164151-1|AAD47075.1|  148|Anopheles gambiae translation
           initiation factor 4C (1A) protein.
          Length = 148

 Score =  154 bits (373), Expect = 2e-39
 Identities = 69/83 (83%), Positives = 77/83 (92%)
 Frame = +1

Query: 256 CHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPETVRINET 435
           CHIRGKLRKKVWINQGDIILIGLRDYQD+KADVILKYTPDEARNLKTYGEFPE+VRINET
Sbjct: 59  CHIRGKLRKKVWINQGDIILIGLRDYQDSKADVILKYTPDEARNLKTYGEFPESVRINET 118

Query: 436 VVYSVDGLDEDIEFGDEVSSEDE 504
           V +  + +D+DIEFGD+ SS +E
Sbjct: 119 VTFVENDMDDDIEFGDDYSSSEE 141



 Score = 70.5 bits (165), Expect = 3e-14
 Identities = 32/43 (74%), Positives = 34/43 (79%)
 Frame = +2

Query: 158 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRRVTSEGNYEKK 286
           L+FKED QEYAQVTKMLGNGRLEAMCFDG+KR     G   KK
Sbjct: 26  LIFKEDEQEYAQVTKMLGNGRLEAMCFDGVKRLCHIRGKLRKK 68


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 28.7 bits (61), Expect = 0.13
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 280 KKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFP 411
           K+  ++  + +++ +  Y   K   IL+YT D  R  K Y EFP
Sbjct: 757 KRYLVHAIENLIVVIVIYDKCKDVAILQYTSDRWRQQKYYDEFP 800


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +3

Query: 120 GEERTKMKLKNVSWSLRKTDKSTPKSQRCSVMAAWRPCALMASNAVSHPRETTKKSV-DK 296
           GE+ + ++++ ++  +       P S R SVMA +    ++ + A     +T ++SV + 
Sbjct: 56  GEKTSSLRVRKLTELINGASIGRPISNRASVMARF----IIKTEAEGEVEKTFQRSVINA 111

Query: 297 SRRHNIN 317
           S  + IN
Sbjct: 112 SSEYRIN 118


>AJ304411-1|CAC39104.1|  187|Anopheles gambiae LDL receptor protein.
          Length = 187

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 331 YQDAKADVILKYTPDEARNLKTYGE 405
           + D   DVI++ TPD  R  + Y E
Sbjct: 93  WADTIEDVIMRSTPDGMRIKQIYSE 117


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 481,714
Number of Sequences: 2352
Number of extensions: 9003
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 51301854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)