Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060493.seq
         (553 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099920-3|AAK29845.1|  216|Caenorhabditis elegans Hypothetical ...   111   3e-25
AF039038-6|AAK21431.2|  629|Caenorhabditis elegans Hypothetical ...    31   0.55 
U34661-1|AAA92006.1|  962|Caenorhabditis elegans ionotropic glut...    29   2.2  
L16559-2|AAA27933.3|  962|Caenorhabditis elegans Glutamate recep...    29   2.2  
U29535-11|AAK31456.1|  947|Caenorhabditis elegans Hypothetical p...    29   2.9  
Z93379-4|CAB07588.1|  306|Caenorhabditis elegans Hypothetical pr...    27   6.8  
AL031629-3|CAA20976.1|  555|Caenorhabditis elegans Hypothetical ...    27   9.0  

>AF099920-3|AAK29845.1|  216|Caenorhabditis elegans Hypothetical
           protein H06H21.3 protein.
          Length = 216

 Score =  111 bits (267), Expect = 3e-25
 Identities = 57/88 (64%), Positives = 62/88 (70%), Gaps = 1/88 (1%)
 Frame = +1

Query: 247 QTPCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPETVRI 426
           Q  CHIRGKLRKKVWIN GDIIL+GLRDYQD K DVILKYTPDEAR LK  G  PE  ++
Sbjct: 56  QRVCHIRGKLRKKVWINVGDIILVGLRDYQDDKGDVILKYTPDEARRLKNEGLIPENAKL 115

Query: 427 NETVVYSVDGLDE-DIEFGDEVSSEDEA 507
           NE      D  DE ++EF D V  E EA
Sbjct: 116 NEN-----DEQDEGEVEFLDHVGDEGEA 138



 Score = 53.6 bits (123), Expect = 9e-08
 Identities = 24/43 (55%), Positives = 29/43 (67%)
 Frame = +2

Query: 158 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRRVTSEGNYEKK 286
           L  KE+GQEY QV+KMLGNGR++  CFDG +R     G   KK
Sbjct: 26  LDLKEEGQEYGQVSKMLGNGRVQVFCFDGKQRVCHIRGKLRKK 68


>AF039038-6|AAK21431.2|  629|Caenorhabditis elegans Hypothetical
           protein K06A5.1 protein.
          Length = 629

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
 Frame = +3

Query: 72  SYKTCRKTKVKEEKIGGEERTKMKLKNVSWSLRKTDKSTP----KSQRCSVMAAWRPCAL 239
           S KT RKTK+++ KI      K ++ +  WS+ ++ K  P    +++  S M        
Sbjct: 102 SEKTPRKTKLRDGKIIDSNDQKQEVSSRKWSVGRSKKRPPTQMAENETSSCMKPREKSTR 161

Query: 240 MASNAVSHPRETTKKSVDKSRRHNINRPTRLSRCES 347
             +     P + ++     S     N   +LS+C S
Sbjct: 162 SQAEVYLPPLKRSRSKCQVSAPQPSNSSLQLSQCIS 197


>U34661-1|AAA92006.1|  962|Caenorhabditis elegans ionotropic
           glutamate receptor subunitprotein.
          Length = 962

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +2

Query: 158 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRRV--TSEGNYEKKCG 292
           ++ K +  E A +T+  GN + E  C D +K       E NYE K G
Sbjct: 471 VMIKRECLEMANLTECQGNNKFEGFCIDLLKLLADKIEEFNYEIKLG 517


>L16559-2|AAA27933.3|  962|Caenorhabditis elegans Glutamate receptor
           family (ampa)protein 1 protein.
          Length = 962

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +2

Query: 158 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRRV--TSEGNYEKKCG 292
           ++ K +  E A +T+  GN + E  C D +K       E NYE K G
Sbjct: 471 VMIKRECLEMANLTECQGNNKFEGFCIDLLKLLADKIEEFNYEIKLG 517


>U29535-11|AAK31456.1|  947|Caenorhabditis elegans Hypothetical
           protein C25H3.11 protein.
          Length = 947

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +3

Query: 165 LRKTDKSTPKSQRCSVMAAWRPCALMASNAVSHPRETTKKSVDKSRRHNINR 320
           LR  ++   + +R      WRP   +  NA    +    + +++SRR N NR
Sbjct: 297 LRAVNREWARFERARQHRKWRPLCTIGENAKEWWKFAYNRVLEESRRANANR 348


>Z93379-4|CAB07588.1|  306|Caenorhabditis elegans Hypothetical
           protein F21H7.5 protein.
          Length = 306

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
 Frame = +3

Query: 69  KSYKTCRKTKVKEEKIGGEERTKMKLKNVSWSLRKTDKST-PKSQRCSVMAAWRPCALMA 245
           KS+++  KT  +  K G   +T    K+   S  K+ KS  P   +  V+    P    A
Sbjct: 47  KSHRSS-KTNKRSGKSGKSGKTGKSGKSGKSSRGKSSKSKKPSKSKAGVL----PIPGAA 101

Query: 246 SNAVSHPRETTKKSVDKSRRHNINRPTRLSRCE 344
               S  ++  + S DKS+     R ++  +C+
Sbjct: 102 GGPKSESKKLRRDSTDKSKSQRSKRSSKSKKCD 134


>AL031629-3|CAA20976.1|  555|Caenorhabditis elegans Hypothetical
           protein Y106G6D.3 protein.
          Length = 555

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
 Frame = +3

Query: 87  RKTKVKEEKIGGEERTKMKLKNVSWSLRKTDKSTPKSQRC---SVMAAWRPCALMASNAV 257
           R+ + KE++     +TK   KN     +K+ K + +S+R    ++  A     L  S   
Sbjct: 255 RRRRAKEDQNVKARKTKKVKKNEEVPSKKSSKMSKRSKRSTDENLETAKSSRILKDSEPK 314

Query: 258 SHPRETTKKSVDKSRRHNINRPTRLSRCE 344
           S     T + +D SR  +  R   L R E
Sbjct: 315 SSRSSVTSQKIDSSRGMSKLRADALKRME 343


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,870,728
Number of Sequences: 27780
Number of extensions: 197928
Number of successful extensions: 615
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)