Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060493.seq
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   3.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.3  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 264 PRETTKKSVDKSRRHNINRPTRLSRCES 347
           PR T  K    +R  +  RP+R + CES
Sbjct: 385 PRSTHLKVSGINRVGSTRRPSRRNSCES 412


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 210  VMAAWRPCALMASNAVSHP-RETTKKSVDKSR 302
            V+  WR  A +A NAV  P RE  K   ++ R
Sbjct: 1323 VVRPWRGSATLACNAVGDPTREWYKGQGEQIR 1354


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 210  VMAAWRPCALMASNAVSHP-RETTKKSVDKSR 302
            V+  WR  A +A NAV  P RE  K   ++ R
Sbjct: 1319 VVRPWRGSATLACNAVGDPTREWYKGQGEQIR 1350


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 457 LDEDIEFGDEVSSEDEAVM 513
           LD+ I+  D+V  EDE V+
Sbjct: 344 LDDGIDILDDVKCEDERVI 362



 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 162 SLRKTDKSTPKSQRCSVM 215
           S +K   +TPK  +CS++
Sbjct: 270 SKKKLSPATPKGSKCSMI 287


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 261 VTRRLMPSKHMASKRPLPSIFVTWAYS 181
           VT+ +  +KH  ++R   +I + WA S
Sbjct: 288 VTQPIKYAKHKNNRRVWLTILLVWAIS 314


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,683
Number of Sequences: 438
Number of extensions: 2513
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)