Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060492.seq
         (684 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.3  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   2.3  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = +2

Query: 221  FNFAVVDNNRQRXKSHXIWXSVSEQXF 301
            + FAV+D++    K H  W  +  + +
Sbjct: 2355 YGFAVLDSSSMTLKPHDSWADIDNEFY 2381



 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +2

Query: 221  FNFAVVDNNRQRXKSHXIWXSVSEQXF 301
            + FAV+D      K+H  W     Q +
Sbjct: 1432 YGFAVLDFENLIVKAHDSWADFDNQFY 1458


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 9   GNDMAPTQGLQRALKQKEYIKIIELAVKSPNNRVYLLNL 125
           G D +P   LQRA   K Y +    A K P + + L+ +
Sbjct: 114 GGDTSPNSALQRARADKTYRRSYTHA-KPPYSYISLITM 151


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,057
Number of Sequences: 336
Number of extensions: 2995
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)