Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060492.seq
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   3.3  
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces...    26   4.4  
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    26   4.4  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   7.7  

>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 94  LPTIVSICSICKMTRFXSAXRANVTDAPILFTC 192
           LP ++ +CS+   T+  ++  ANVT A IL  C
Sbjct: 368 LPNLLKVCSV---TKKLASQAANVTFAAILVNC 397


>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 588 TIWHVRGQIRRFPYSSHRLCSAAXQVL 508
           +IW VRGQ R F YS   L  A  + L
Sbjct: 430 SIWEVRGQERNFLYSKIMLWVALDRAL 456


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 554 KRLICPRTCQIVSRSSDGXHFVXALREXRVAKNLKI 661
           +R+ C RTC+I +   DG   V  L    V   +K+
Sbjct: 264 ERVFCSRTCRITTIQRDGLESVKQLGTQNVLDLIKL 299


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +3

Query: 24  PTQGLQRALKQKEYIKIIELAVKSPNNRVYLLNLQDDTF 140
           P++GL++  +  +Y+K+I    K     V  ++  + TF
Sbjct: 513 PSRGLRKRFRHGDYVKVIAGKYKDDTGMVVRISKDEVTF 551


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,467
Number of Sequences: 5004
Number of extensions: 47332
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)