Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060492.seq
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0270 + 21954652-21955245,21955827-21955964,21956050-219562...    29   2.6  
12_02_0410 + 18701258-18701327,18701398-18701630,18701782-187026...    29   4.5  

>09_06_0270 +
           21954652-21955245,21955827-21955964,21956050-21956295,
           21956407-21956520,21956633-21956815,21956926-21957143,
           21957210-21957246,21957865-21958219,21958284-21958337,
           21958513-21958529
          Length = 651

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/81 (23%), Positives = 33/81 (40%)
 Frame = +2

Query: 335 LLDMEXISKNYNNLVLSVQQKYAHKLNWKRIVASHILLKEWFKEPIKQYIDYDYVFKYST 514
           LLDM    KN  +++        + +          LL+   K+P+K  ++Y   F YS 
Sbjct: 520 LLDMGLSKKNVCSMIYRFSPLLGYSIELVMKPKLEFLLRT-MKKPLKAVVEYPRYFSYSL 578

Query: 515 *XAALHKRCELYGKRLICPRT 577
                 + C L  +++ C  T
Sbjct: 579 EGRIKPRFCVLQSRKIDCSLT 599


>12_02_0410 +
           18701258-18701327,18701398-18701630,18701782-18702639,
           18703006-18703865,18704285-18704395,18704486-18704567,
           18704643-18704735,18704795-18704989
          Length = 833

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = +1

Query: 82  WPS-NLPTIVSICS--ICKMTRFXSAXRANVTDAP-ILFT 189
           WP    P++ ++CS  +CKM R     R   TD P IL++
Sbjct: 737 WPCYKRPSLTNLCSYYVCKMLRVNGRYRTEFTDLPSILYS 776


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,517,006
Number of Sequences: 37544
Number of extensions: 290186
Number of successful extensions: 485
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)