Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060492.seq
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17243| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.87 
SB_28947| Best HMM Match : Sugar_tr (HMM E-Value=2.1e-06)              31   1.1  
SB_4460| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_5338| Best HMM Match : rve (HMM E-Value=0.0034)                     28   8.1  
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.1  

>SB_17243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +2

Query: 341 DMEXISKNYNNLVLSVQQKYAHKLNWKRIVASHILLKEWFKEPIKQY 481
           +ME ++K  ++ VL  QQ+ A K NW+ +    I  K  + + + +Y
Sbjct: 129 EMETLTKKNSSEVLETQQRQASKKNWEILFTLQITNKRVYMQYLPKY 175


>SB_28947| Best HMM Match : Sugar_tr (HMM E-Value=2.1e-06)
          Length = 624

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -1

Query: 561 RRFPYSSHRLCSAAXQVLYLNT*S*SMYCLMGSLNHSFSSM 439
           RRFPYSS+ L + A  +L L     S++   G+   +F+S+
Sbjct: 318 RRFPYSSYMLSAGAASLLILAVFKVSLFEKTGNTGETFNSL 358


>SB_4460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 685

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 22/97 (22%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
 Frame = +2

Query: 191 VSQQIGLENYFNFAVVDNNRQRXKSHXIWXSVSEQXFLTQXXILA--FGDLLDMEXISKN 364
           V+Q + L   F  A ++ N    K      S++EQ    +  I +  F  ++ +  + ++
Sbjct: 100 VTQIVRLSRKFYAATMEENDDLMKHLTAMTSLAEQLRELEEQISSRKFATVV-LGSLPES 158

Query: 365 YNNLVLSVQQKYAHKLNWKRIVASHILLKEWFKEPIK 475
           Y+N + S+  + A +L+W+ +    +L++E+ K   K
Sbjct: 159 YDNFLTSLNARNAGELDWEMV--KGLLIEEYMKHKEK 193


>SB_5338| Best HMM Match : rve (HMM E-Value=0.0034)
          Length = 537

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 374 LVLSVQQKYAHKLNWKRIVASHILLKEWFKE 466
           LVLS+ +   +KL  K ++  H+ L+ W++E
Sbjct: 81  LVLSILRNLTNKLRNKLLMNLHVRLRRWWRE 111


>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3261

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 154  RANVTDAPILFTCFATNWIGKLFQFC 231
            RAN T+AP+L T FA  W+    Q+C
Sbjct: 1490 RANCTNAPLLRTLFAKLWLTS--QYC 1513


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,776,984
Number of Sequences: 59808
Number of extensions: 366093
Number of successful extensions: 740
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)