Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060492.seq
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z81529-9|CAB04302.1|  277|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF301606-1|AAG30870.1|  277|Caenorhabditis elegans cadmium-induc...    29   3.1  
AY305835-1|AAR11980.1|  618|Caenorhabditis elegans nuclear recep...    29   4.1  
AL110479-24|CAJ76966.1| 1084|Caenorhabditis elegans Hypothetical...    29   4.1  
AL110479-23|CAB60320.2| 1254|Caenorhabditis elegans Hypothetical...    29   4.1  
AF273820-1|AAG15169.1|  624|Caenorhabditis elegans nuclear recep...    29   4.1  
AF273819-1|AAG15168.1|  619|Caenorhabditis elegans nuclear recep...    29   4.1  
AF047660-8|AAM54167.1|  526|Caenorhabditis elegans Nuclear hormo...    29   4.1  
AF047660-7|AAM54166.1|  577|Caenorhabditis elegans Nuclear hormo...    29   4.1  
AF047660-6|AAV34786.1|  659|Caenorhabditis elegans Nuclear hormo...    29   4.1  
AF047660-5|AAM54168.1|  733|Caenorhabditis elegans Nuclear hormo...    29   4.1  
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    28   5.4  
Z74038-8|CAD21642.1|  540|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z72507-16|CAC35887.1|  540|Caenorhabditis elegans Hypothetical p...    27   9.4  

>Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical protein
            D2085.1 protein.
          Length = 2198

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 182  KIGASVTFARXA-LXKRVILQIEQIDTIVGRFDGQFNYFYIFF 57
            KIG++    R A   K +   ++QIDT+ G +  Q NY Y  F
Sbjct: 880  KIGSNEYTVREARFVKGITPCVKQIDTVAGEWPAQTNYLYTTF 922


>Z81529-9|CAB04302.1|  277|Caenorhabditis elegans Hypothetical
           protein F35E8.11 protein.
          Length = 277

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +2

Query: 89  QISQQSCLFAQFAR*HVLXAXIARMLRTRRFYSXVSQQIGLENYFNFAVV 238
           ++  QS   ++FA  H+    I   +    FY  + + IGL  + NF ++
Sbjct: 124 ELETQSVALSKFADHHLFFVLIRFKIAVDEFYKTIIEIIGLPTFLNFLLM 173


>AF301606-1|AAG30870.1|  277|Caenorhabditis elegans
           cadmium-inducible lysosomal proteinCDR-1 protein.
          Length = 277

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +2

Query: 89  QISQQSCLFAQFAR*HVLXAXIARMLRTRRFYSXVSQQIGLENYFNFAVV 238
           ++  QS   ++FA  H+    I   +    FY  + + IGL  + NF ++
Sbjct: 124 ELETQSVALSKFADHHLFFVLIRFKIAVDEFYKTIIEIIGLPTFLNFLLM 173


>AY305835-1|AAR11980.1|  618|Caenorhabditis elegans nuclear receptor
           NHR-66 protein.
          Length = 618

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +2

Query: 359 KNYNNLVLSVQQKYAHKLNWKRIVASHILLKEWFKEPIKQYIDYDYVFKY 508
           K Y N V+  Q      L W+       L K WF  P   YID++ + KY
Sbjct: 388 KIYRNFVIMRQSVEEPYLTWRH----GGLEKRWFVMPNNTYIDFNNIAKY 433


>AL110479-24|CAJ76966.1| 1084|Caenorhabditis elegans Hypothetical
            protein Y105C5B.21b protein.
          Length = 1084

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 576  VRGQIRRFPYSSHRLCSAAXQVLYL 502
            +R   R +P  SHR+C  A QVLY+
Sbjct: 941  LRALSRSYPTYSHRVCKYASQVLYV 965


>AL110479-23|CAB60320.2| 1254|Caenorhabditis elegans Hypothetical
            protein Y105C5B.21a protein.
          Length = 1254

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 576  VRGQIRRFPYSSHRLCSAAXQVLYL 502
            +R   R +P  SHR+C  A QVLY+
Sbjct: 1111 LRALSRSYPTYSHRVCKYASQVLYV 1135


>AF273820-1|AAG15169.1|  624|Caenorhabditis elegans nuclear receptor
           NHR-66 protein.
          Length = 624

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +2

Query: 359 KNYNNLVLSVQQKYAHKLNWKRIVASHILLKEWFKEPIKQYIDYDYVFKY 508
           K Y N V+  Q      L W+       L K WF  P   YID++ + KY
Sbjct: 392 KIYRNFVIMRQSVEEPYLTWRH----GGLEKRWFVMPNNTYIDFNNIAKY 437


>AF273819-1|AAG15168.1|  619|Caenorhabditis elegans nuclear receptor
           NHR-66 protein.
          Length = 619

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +2

Query: 359 KNYNNLVLSVQQKYAHKLNWKRIVASHILLKEWFKEPIKQYIDYDYVFKY 508
           K Y N V+  Q      L W+       L K WF  P   YID++ + KY
Sbjct: 387 KIYRNFVIMRQSVEEPYLTWRH----GGLEKRWFVMPNNTYIDFNNIAKY 432


>AF047660-8|AAM54167.1|  526|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 66, isoform b protein.
          Length = 526

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +2

Query: 359 KNYNNLVLSVQQKYAHKLNWKRIVASHILLKEWFKEPIKQYIDYDYVFKY 508
           K Y N V+  Q      L W+       L K WF  P   YID++ + KY
Sbjct: 294 KIYRNFVIMRQSVEEPYLTWRH----GGLEKRWFVMPNNTYIDFNNIAKY 339


>AF047660-7|AAM54166.1|  577|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 66, isoform a protein.
          Length = 577

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +2

Query: 359 KNYNNLVLSVQQKYAHKLNWKRIVASHILLKEWFKEPIKQYIDYDYVFKY 508
           K Y N V+  Q      L W+       L K WF  P   YID++ + KY
Sbjct: 345 KIYRNFVIMRQSVEEPYLTWRH----GGLEKRWFVMPNNTYIDFNNIAKY 390


>AF047660-6|AAV34786.1|  659|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 66, isoform d protein.
          Length = 659

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +2

Query: 359 KNYNNLVLSVQQKYAHKLNWKRIVASHILLKEWFKEPIKQYIDYDYVFKY 508
           K Y N V+  Q      L W+       L K WF  P   YID++ + KY
Sbjct: 427 KIYRNFVIMRQSVEEPYLTWRH----GGLEKRWFVMPNNTYIDFNNIAKY 472


>AF047660-5|AAM54168.1|  733|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 66, isoform c protein.
          Length = 733

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +2

Query: 359 KNYNNLVLSVQQKYAHKLNWKRIVASHILLKEWFKEPIKQYIDYDYVFKY 508
           K Y N V+  Q      L W+       L K WF  P   YID++ + KY
Sbjct: 501 KIYRNFVIMRQSVEEPYLTWRH----GGLEKRWFVMPNNTYIDFNNIAKY 546


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 542  ELYGKRLICPRTCQIVSRSSDGXH 613
            E+YGK+LI P TC      +D  H
Sbjct: 1993 EVYGKKLIYPHTCPFNGDRNDSCH 2016


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
            protein F25H8.3 protein.
          Length = 2165

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 542  ELYGKRLICPRTCQIVSRSSDGXH 613
            E+YGK+LI P TC      +D  H
Sbjct: 1993 EVYGKKLIYPHTCPFNGDRNDSCH 2016


>Z74038-8|CAD21642.1|  540|Caenorhabditis elegans Hypothetical
           protein F17C11.12 protein.
          Length = 540

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +2

Query: 209 LENYFNFAVVDNNRQRXKSHXIWXSVSEQXFLTQXXILAF 328
           LEN  +  V D N +  K H  W     +  +T   ++AF
Sbjct: 299 LENEHDKQVADGNTEVGKQHSFWHLFKTKEIMTGTFVIAF 338


>Z72507-16|CAC35887.1|  540|Caenorhabditis elegans Hypothetical
           protein F17C11.12 protein.
          Length = 540

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +2

Query: 209 LENYFNFAVVDNNRQRXKSHXIWXSVSEQXFLTQXXILAF 328
           LEN  +  V D N +  K H  W     +  +T   ++AF
Sbjct: 299 LENEHDKQVADGNTEVGKQHSFWHLFKTKEIMTGTFVIAF 338


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,530,187
Number of Sequences: 27780
Number of extensions: 273903
Number of successful extensions: 564
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)