Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060491.seq
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0410 + 18701258-18701327,18701398-18701630,18701782-187026...    32   0.37 
11_06_0520 + 24539403-24539603,24539919-24540325,24541002-245411...    29   3.4  
10_01_0140 - 1674305-1674586,1674683-1674838,1675676-1676622,167...    29   3.4  
04_04_0075 - 22542486-22542882,22543181-22543362,22543452-225436...    29   3.4  
01_06_0767 + 31823659-31823734,31823859-31823979,31824078-318241...    29   4.5  
01_02_0095 - 11076493-11077644,11077845-11077918,11078155-11078320     29   4.5  

>12_02_0410 +
           18701258-18701327,18701398-18701630,18701782-18702639,
           18703006-18703865,18704285-18704395,18704486-18704567,
           18704643-18704735,18704795-18704989
          Length = 833

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = +1

Query: 82  WPS-NLPTIVSICS--ICKMTRFGSAYRANVTDAP-ILFT 189
           WP    P++ ++CS  +CKM R    YR   TD P IL++
Sbjct: 737 WPCYKRPSLTNLCSYYVCKMLRVNGRYRTEFTDLPSILYS 776


>11_06_0520 +
           24539403-24539603,24539919-24540325,24541002-24541187,
           24541550-24541742,24541945-24542021,24542400-24542550,
           24543229-24543462,24543577-24543591
          Length = 487

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 565 SAYMQDCVKISDALICIAYVXAACKN 642
           S Y+ DC +ISD  +C  Y+   CKN
Sbjct: 295 SLYLVDCSRISDDALC--YIAQGCKN 318


>10_01_0140 -
           1674305-1674586,1674683-1674838,1675676-1676622,
           1678976-1679054,1679168-1679207,1679580-1679767,
           1679869-1680024,1680752-1681713,1681866-1681914
          Length = 952

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 336 KSPNASIKSCVKNFC-SDTNDQIKCDLNRW 250
           + PNASI+S    FC SD  D    + NRW
Sbjct: 145 RDPNASIRSFFLRFCRSDGGDDGSAEGNRW 174


>04_04_0075 -
           22542486-22542882,22543181-22543362,22543452-22543637,
           22543959-22544057,22546198-22546314,22547739-22547855
          Length = 365

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = -1

Query: 393 CCTDNTRLL*FLDISSMSNKSPNASIKSCVKNFCS----DTNDQIKCD 262
           C T   R   F D+S   +   N+SI SC+KNFCS    +  D+  CD
Sbjct: 185 CETVTARDETFFDLSV--DIEQNSSITSCLKNFCSTETLNAEDKFFCD 230


>01_06_0767 +
           31823659-31823734,31823859-31823979,31824078-31824189,
           31824278-31824691,31824795-31824898,31825017-31825136,
           31825344-31825467,31826567-31826680,31826789-31826980,
           31827328-31827424,31827505-31827653,31828729-31829013
          Length = 635

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = -1

Query: 327 NASIKSCVKNFCSDTNDQIKCDLNRWRLLSTTAKL 223
           NAS+K+ +   C + +++I+ DLN+ + ++ T  L
Sbjct: 355 NASVKTWLDRLCEELSERIQSDLNQNKRIAQTLTL 389


>01_02_0095 - 11076493-11077644,11077845-11077918,11078155-11078320
          Length = 463

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -2

Query: 227 N*NNFPIQFVAKHVNKIGASVTFARYALPKRVILQIEQIDTIVGRFDG 84
           N ++  +Q +   VN  G S+T+ARYAL   ++  +  I+     F G
Sbjct: 73  NFSHMEVQLMDWMVNTKGMSMTYARYALHLELLYSVYGIEAAEEYFSG 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,528,495
Number of Sequences: 37544
Number of extensions: 370303
Number of successful extensions: 833
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)