Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060491.seq
(684 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74038-8|CAD21642.1| 540|Caenorhabditis elegans Hypothetical pr... 32 0.33
Z72507-16|CAC35887.1| 540|Caenorhabditis elegans Hypothetical p... 32 0.33
AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear recep... 31 1.0
AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear recep... 31 1.0
AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear recep... 31 1.0
AF047660-8|AAM54167.1| 526|Caenorhabditis elegans Nuclear hormo... 31 1.0
AF047660-7|AAM54166.1| 577|Caenorhabditis elegans Nuclear hormo... 31 1.0
AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormo... 31 1.0
AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormo... 31 1.0
Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical pr... 30 1.3
U39674-2|AAY86211.1| 94|Caenorhabditis elegans Hypothetical pr... 30 1.3
AC006714-10|AAK29727.2| 253|Caenorhabditis elegans F-box a prot... 29 2.3
AC093703-5|AAL00865.1| 725|Caenorhabditis elegans Hypothetical ... 29 3.1
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical p... 28 7.1
Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z81549-8|CAB04469.1| 285|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z81529-9|CAB04302.1| 277|Caenorhabditis elegans Hypothetical pr... 27 9.4
AF301606-1|AAG30870.1| 277|Caenorhabditis elegans cadmium-induc... 27 9.4
>Z74038-8|CAD21642.1| 540|Caenorhabditis elegans Hypothetical
protein F17C11.12 protein.
Length = 540
Score = 32.3 bits (70), Expect = 0.33
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 209 LENYFNFAVVDNNRQRFKSHLIWSLVSEQKFLTQDFILAF 328
LEN + V D N + K H W L ++ +T F++AF
Sbjct: 299 LENEHDKQVADGNTEVGKQHSFWHLFKTKEIMTGTFVIAF 338
>Z72507-16|CAC35887.1| 540|Caenorhabditis elegans Hypothetical
protein F17C11.12 protein.
Length = 540
Score = 32.3 bits (70), Expect = 0.33
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 209 LENYFNFAVVDNNRQRFKSHLIWSLVSEQKFLTQDFILAF 328
LEN + V D N + K H W L ++ +T F++AF
Sbjct: 299 LENEHDKQVADGNTEVGKQHSFWHLFKTKEIMTGTFVIAF 338
>AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 618
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +2
Query: 332 DLLDMEEISKNYNNLVLSVQQKYAHKLNWKRIVASHILLKEWFKEPIKQYIDYDYVFKY 508
D L + E K Y N V+ Q L W+ L K WF P YID++ + KY
Sbjct: 379 DPLPIVEKLKIYRNFVIMRQSVEEPYLTWRH----GGLEKRWFVMPNNTYIDFNNIAKY 433
>AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 624
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +2
Query: 332 DLLDMEEISKNYNNLVLSVQQKYAHKLNWKRIVASHILLKEWFKEPIKQYIDYDYVFKY 508
D L + E K Y N V+ Q L W+ L K WF P YID++ + KY
Sbjct: 383 DPLPIVEKLKIYRNFVIMRQSVEEPYLTWRH----GGLEKRWFVMPNNTYIDFNNIAKY 437
>AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 619
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +2
Query: 332 DLLDMEEISKNYNNLVLSVQQKYAHKLNWKRIVASHILLKEWFKEPIKQYIDYDYVFKY 508
D L + E K Y N V+ Q L W+ L K WF P YID++ + KY
Sbjct: 378 DPLPIVEKLKIYRNFVIMRQSVEEPYLTWRH----GGLEKRWFVMPNNTYIDFNNIAKY 432
>AF047660-8|AAM54167.1| 526|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform b protein.
Length = 526
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +2
Query: 332 DLLDMEEISKNYNNLVLSVQQKYAHKLNWKRIVASHILLKEWFKEPIKQYIDYDYVFKY 508
D L + E K Y N V+ Q L W+ L K WF P YID++ + KY
Sbjct: 285 DPLPIVEKLKIYRNFVIMRQSVEEPYLTWRH----GGLEKRWFVMPNNTYIDFNNIAKY 339
>AF047660-7|AAM54166.1| 577|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform a protein.
Length = 577
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +2
Query: 332 DLLDMEEISKNYNNLVLSVQQKYAHKLNWKRIVASHILLKEWFKEPIKQYIDYDYVFKY 508
D L + E K Y N V+ Q L W+ L K WF P YID++ + KY
Sbjct: 336 DPLPIVEKLKIYRNFVIMRQSVEEPYLTWRH----GGLEKRWFVMPNNTYIDFNNIAKY 390
>AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform d protein.
Length = 659
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +2
Query: 332 DLLDMEEISKNYNNLVLSVQQKYAHKLNWKRIVASHILLKEWFKEPIKQYIDYDYVFKY 508
D L + E K Y N V+ Q L W+ L K WF P YID++ + KY
Sbjct: 418 DPLPIVEKLKIYRNFVIMRQSVEEPYLTWRH----GGLEKRWFVMPNNTYIDFNNIAKY 472
>AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform c protein.
Length = 733
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +2
Query: 332 DLLDMEEISKNYNNLVLSVQQKYAHKLNWKRIVASHILLKEWFKEPIKQYIDYDYVFKY 508
D L + E K Y N V+ Q L W+ L K WF P YID++ + KY
Sbjct: 492 DPLPIVEKLKIYRNFVIMRQSVEEPYLTWRH----GGLEKRWFVMPNNTYIDFNNIAKY 546
>Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical protein
D2085.1 protein.
Length = 2198
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -2
Query: 200 VAKHVNKIGASVTFARYALPKRVILQIEQIDTIVGRFDGQFNYFYIFF 57
+AK + +V AR+ K + ++QIDT+ G + Q NY Y F
Sbjct: 877 IAKKIGSNEYTVREARFV--KGITPCVKQIDTVAGEWPAQTNYLYTTF 922
>U39674-2|AAY86211.1| 94|Caenorhabditis elegans Hypothetical
protein C06E2.9 protein.
Length = 94
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +2
Query: 233 VVDNNRQRFKSHLIWSLVSEQKFLTQDFILAFGDLLDMEEISKNYNNLVLSVQQKYAHKL 412
+ DN++ RF + LI+ K ++QDFI D DM ++ + S+ + H
Sbjct: 9 IFDNSKMRFITVLIFVFALLSKAVSQDFI---DDSADMHRFRRHVEHQKHSLNDGHLHSR 65
Query: 413 NWKRI 427
N K +
Sbjct: 66 NSKNV 70
>AC006714-10|AAK29727.2| 253|Caenorhabditis elegans F-box a protein
protein 21 protein.
Length = 253
Score = 29.5 bits (63), Expect = 2.3
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Frame = +3
Query: 36 LQRALKQKEYIKIIELAVKSP--NNRVYLLNLQDDTFWKRISRECYGRADFIHVFRNKLD 209
L LK K+ + EL S N+ + +L DD KRI C R D I +
Sbjct: 77 LMEVLKAKKCVHATELTFWSFSFNDIISILQFFDDQVLKRIEILCTERIDHIERIFDLPQ 136
Query: 210 WKIISILPLSITIAN 254
WK S L T+ N
Sbjct: 137 WKNASNFELRGTVFN 151
>AC093703-5|AAL00865.1| 725|Caenorhabditis elegans Hypothetical
protein Y20F4.5 protein.
Length = 725
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +2
Query: 134 HVLEAHIARMLRTRRFYSRVSQQIGLENYFNFAVVDNNRQRFKS 265
HVL AH+ + +T R R+S+Q G+E+ AV + +RF S
Sbjct: 624 HVLVAHVVEVAKTERNLGRLSEQ-GIESL--HAVFNRLERRFHS 664
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 187 TCFA-TNWIGKLFQFCRCR*QSPTV*IAFDLVVGV*AKIFDARFYTRVWRLVG 342
TC + TN + K+ + R + ++G+ +IFDA Y VW +VG
Sbjct: 259 TCKSYTNSLHKIAMDIKARKTDANDPYQVNFIMGLRERIFDANIYQPVWNVVG 311
>Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 321 SRLATCWTWKKYPKITITSCCRCSKNTH 404
+RL T T +K IT CRC N H
Sbjct: 362 ARLVTACTCQKVSDITFLMFCRCDGNAH 389
>Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 321 SRLATCWTWKKYPKITITSCCRCSKNTH 404
+RL T T +K IT CRC N H
Sbjct: 362 ARLVTACTCQKVSDITFLMFCRCDGNAH 389
>Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 321 SRLATCWTWKKYPKITITSCCRCSKNTH 404
+RL T T +K IT CRC N H
Sbjct: 362 ARLVTACTCQKVSDITFLMFCRCDGNAH 389
>Z81549-8|CAB04469.1| 285|Caenorhabditis elegans Hypothetical
protein F55C9.10 protein.
Length = 285
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +3
Query: 24 PTQGLQRALKQKEYIKIIELAV--KSPNNRVYLLNLQDDTFWKRISRECY 167
P + L+ A++ +II+ ++ KS LNLQ D FW I+ Y
Sbjct: 13 PEKSLRIAIQSLTLEQIIKFSLISKSTKRTAESLNLQTDPFWLYINESVY 62
>Z81529-9|CAB04302.1| 277|Caenorhabditis elegans Hypothetical
protein F35E8.11 protein.
Length = 277
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +2
Query: 89 QISQQSCLFAQFAR*HVLEAHIARMLRTRRFYSRVSQQIGLENYFNFAVV 238
++ QS ++FA H+ I + FY + + IGL + NF ++
Sbjct: 124 ELETQSVALSKFADHHLFFVLIRFKIAVDEFYKTIIEIIGLPTFLNFLLM 173
>AF301606-1|AAG30870.1| 277|Caenorhabditis elegans
cadmium-inducible lysosomal proteinCDR-1 protein.
Length = 277
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +2
Query: 89 QISQQSCLFAQFAR*HVLEAHIARMLRTRRFYSRVSQQIGLENYFNFAVV 238
++ QS ++FA H+ I + FY + + IGL + NF ++
Sbjct: 124 ELETQSVALSKFADHHLFFVLIRFKIAVDEFYKTIIEIIGLPTFLNFLLM 173
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,574,351
Number of Sequences: 27780
Number of extensions: 358882
Number of successful extensions: 954
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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