Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060491.seq
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g45230.1 68414.m05193 defective chloroplasts and leaves prote...    32   0.41 
At1g34160.1 68414.m04237 pentatricopeptide (PPR) repeat-containi...    29   2.2  
At5g35917.1 68418.m04317 cytochrome P450, putative similar to Cy...    28   6.6  
At5g20360.1 68418.m02422 octicosapeptide/Phox/Bem1p (PB1) domain...    28   6.6  
At3g23260.1 68416.m02932 F-box family protein contains Pfam PF00...    28   6.6  
At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME...    27   8.8  
At2g16750.1 68415.m01921 protein kinase family protein contains ...    27   8.8  

>At1g45230.1 68414.m05193 defective chloroplasts and leaves
           protein-related / DCL protein-related similar to
           defective chloroplasts and leaves (DCL) protein
           SP:Q42463 from [Lycopersicon esculentum]
          Length = 219

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = -3

Query: 403 CVFLLHRQHEVIVIFGYFFHVQQVAKREYKILRQKFLLRHQR 278
           C+F++ +  EV V F Y+  ++ + K++Y +    F+LRH R
Sbjct: 173 CMFIVRKDGEV-VDFSYWKCIKGLIKKKYPLYADSFILRHFR 213


>At1g34160.1 68414.m04237 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 558

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 321 SIKSCVKNFCSDTNDQIKCDLNR 253
           ++K+C +  CS   DQ+ C +NR
Sbjct: 115 TLKACARALCSSAMDQLHCQINR 137


>At5g35917.1 68418.m04317 cytochrome P450, putative similar to
           Cytochrome P450 79A2 (SP:Q9FLC8) {Arabidopsis thaliana}
          Length = 490

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +2

Query: 308 QDFILAFGDL-LDMEEISKNYNNLVLSVQQKYAHKLNWKRIVASHILLKEWFK 463
           QD + A   L +  E  S+ Y  L ++VQ +       +R+VASH+  K+ FK
Sbjct: 106 QDSVFAIRPLTMGTEYCSRGY--LTIAVQSQGEQWKKMRRVVASHVTSKKSFK 156


>At5g20360.1 68418.m02422 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein / tetratricopeptide repeat
           (TPR)-containing protein contains Pfam profiles PF00564:
           PB1 domain, PF00515: TPR Domain
          Length = 809

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 374 LVLSVQQKYAHKLNWKRIVASHILLKEWFKEPIKQY 481
           L L +QQ    +L+W  ++ SH+ LK W    + Q+
Sbjct: 602 LALGLQQFEEARLSWYYVLVSHLDLKTWPYADVVQF 637


>At3g23260.1 68416.m02932 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain
          Length = 362

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +2

Query: 197 QQIGLENYFNFAVVDNNRQRFKSHLIWSLVSEQKFLTQDFILAFGDLLDMEE---ISKNY 367
           +Q+ L  Y+N++    +   + +  + S+VS  KFLT   I    D+ D      + +  
Sbjct: 252 EQLCLFGYYNWSTTSEDLNVWVTTSLGSVVSWSKFLTIQIIKPRVDMFDYGMSFLVDEQN 311

Query: 368 NNLVLSVQQKYAH 406
            +LV  + QK  H
Sbjct: 312 KSLVCWISQKVLH 324


>At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER
           protein [Arabidopsis thaliana] GI:21743571; contains
           Pfam profile PF00730: HhH-GPD superfamily base excision
           DNA repair protein
          Length = 1729

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 357 DISSMSNKSPNASIKSCVK 301
           ++  MSNKSP  ++KSC K
Sbjct: 111 NVGDMSNKSPEVTLKSCRK 129


>At2g16750.1 68415.m01921 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 617

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -1

Query: 354 ISSMSNKSPNASIKSCVKNFCSDTNDQIKCDLNRW 250
           + S+  + P+   ++C ++FC      I  D+NRW
Sbjct: 230 VMSLPERFPHHPNQTCQQSFCDKQLKDILKDINRW 264


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,300,589
Number of Sequences: 28952
Number of extensions: 314616
Number of successful extensions: 784
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)