Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060490.seq
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    50   2e-07
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    27   1.9  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       26   5.9  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    25   7.8  
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo...    25   7.8  

>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 25/91 (27%), Positives = 47/91 (51%)
 Frame = +2

Query: 218 VLPEIAI*AADSVREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFX 397
           V   I+  +  S++ QLL     +    +R K+CD ++E+AR+  D  G  +WPE +   
Sbjct: 87  VFSSISNESKQSLQSQLLACFVKESVPTVRNKLCDTIAEIARSIYDCQG--EWPELINVI 144

Query: 398 FTCASAQDPNIKEAGIRMFTSVPGVFGNRQT 490
           F   ++ D + +E+  R  TS+P +   + +
Sbjct: 145 FNAVNSPDESFRESVFRTITSLPRLLSGQDS 175


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 110 CFCWNVVVCVLCL 72
           CF W++ +C+LCL
Sbjct: 215 CFLWSIYICLLCL 227


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 42  LLSTDNDIRSQAEDAYNNIP-TETKVVHLVNSIQNADIAE 158
           L S  ++IR    D YNNIP ++T    +  +I  A I E
Sbjct: 99  LNSATSNIRLTPSDTYNNIPVSDTNNEEISKNIYGAPILE 138


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -3

Query: 276 VSNNCSLTLSAAQMAISGRTQRILH*IIFVTARPPFD 166
           V  +   TL       SG  Q +L  IIFV  + P+D
Sbjct: 623 VLTSAGTTLLGLSWLFSGSAQELLSSIIFVFVKHPYD 659


>SPAPB17E12.10c |||SAM-dependent
           methyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 400 YLCQCARSKHQRSWY*NVYVCTRCIWK 480
           +LC+   S H RS+  ++ +C +C+ K
Sbjct: 244 FLCKVLESSHLRSFAEDLSMCFKCVKK 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,546,119
Number of Sequences: 5004
Number of extensions: 45598
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)