Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060490.seq
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23)                     91   8e-19

>SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23)
          Length = 940

 Score = 91.1 bits (216), Expect = 8e-19
 Identities = 39/93 (41%), Positives = 61/93 (65%)
 Frame = +2

Query: 254 VREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFXFTCASAQDPNIK 433
           ++E LL  +  +    +R+K+CD VSEL+++ +DDDG N W E L+F F C ++    +K
Sbjct: 58  MKESLLKGIHEEQDSNVRKKICDAVSELSKSFLDDDGYNHWQELLKFLFECCNSPRAELK 117

Query: 434 EAGIRMFTSVPGVFGNRQTXNLDVIKAVNIWLC 532
           E+ + +F S PGVFGN+Q   L+VIK + +W C
Sbjct: 118 ESALNIFCSFPGVFGNQQDHYLNVIKQM-LWQC 149



 Score = 27.9 bits (59), Expect(2) = 0.021
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 18 QFYQLLNTLLSTDNDIRSQAE 80
          QF  L+  L+S DND R+QAE
Sbjct: 7  QFEALIGQLMSPDNDTRNQAE 27



 Score = 27.5 bits (58), Expect(2) = 0.021
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +3

Query: 159 DVRQTAAVLLRRLFSA 206
           +VRQ AAVLLRR+F+A
Sbjct: 27  EVRQMAAVLLRRIFTA 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,109,871
Number of Sequences: 59808
Number of extensions: 342793
Number of successful extensions: 885
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)