Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060490.seq
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta...    51   9e-07
U80437-15|AAB37627.1|  445|Caenorhabditis elegans Mus (drosophil...    33   0.14 
Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical pr...    29   4.1  

>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
           family protein 3 protein.
          Length = 1092

 Score = 50.8 bits (116), Expect = 9e-07
 Identities = 27/65 (41%), Positives = 34/65 (52%)
 Frame = +3

Query: 9   DQAQFYQLLNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAEDVRQTAAVLL 188
           D  QF +L+  L S DNDIR QAE+ Y  I   TKV  L  +  +     D R T  V L
Sbjct: 2   DVNQFTELITKLQSADNDIRKQAEEVYEKIEGPTKVAALFEAYTHHTNNSDARSTVLVFL 61

Query: 189 RRLFS 203
           RR+ +
Sbjct: 62  RRVLA 66



 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 22/72 (30%), Positives = 37/72 (51%)
 Frame = +2

Query: 302 LRRKVCDVVSELARNHIDDDGNNQWPEFLQFXFTCASAQDPNIKEAGIRMFTSVPGVFGN 481
           +++K+ D++SE+A N IDD G+  W   L+    C  ++D       + +    P +FGN
Sbjct: 100 IKKKIADLISEIASNLIDDSGDMTWGGVLELMDHCLKSEDLTGNYIALLILRGCPIIFGN 159

Query: 482 RQTXNLDVIKAV 517
           R    L  +K V
Sbjct: 160 RLAHFLPTLKVV 171


>U80437-15|AAB37627.1|  445|Caenorhabditis elegans Mus (drosophila
           mutagen sensitive)related protein 81, isoform a protein.
          Length = 445

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -2

Query: 571 NCPEFAKPLXHLAAKPDINSLYHIQVXSLTISKYTWYRRKHSNTSFFDVWILRTGT 404
           N P F   + HL  K DI     + + SL++  Y W  RK   T     W++   T
Sbjct: 220 NNPRFKSVIEHLVKKEDIR----VDIRSLSVGDYIWICRKIDGTEIVMDWVVERKT 271


>Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical protein
            D2045.2 protein.
          Length = 1792

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/73 (24%), Positives = 33/73 (45%)
 Frame = +2

Query: 245  ADSVREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFXFTCASAQDP 424
            A+ + ++LL  L  D    +R   C  +S+L R H   + +   PE+L+           
Sbjct: 1116 ANEIAKELLPALT-DREYRVRESACLALSDLLRGHDTVEMHKMIPEYLEAILRVRDDVKE 1174

Query: 425  NIKEAGIRMFTSV 463
            +++EA  R   S+
Sbjct: 1175 SVREAADRAADSI 1187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,131,389
Number of Sequences: 27780
Number of extensions: 261436
Number of successful extensions: 653
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)