Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060489.seq
(685 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC550.06c |hsp10||mitochondrial heat shock protein Hsp10|Schiz... 49 5e-07
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 28 1.4
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe... 27 2.5
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 26 4.4
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 26 5.8
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ... 25 7.7
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 25 7.7
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.7
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 25 7.7
>SPCC550.06c |hsp10||mitochondrial heat shock protein
Hsp10|Schizosaccharomyces pombe|chr 3|||Manual
Length = 104
Score = 49.2 bits (112), Expect = 5e-07
Identities = 24/59 (40%), Positives = 37/59 (62%)
Frame = +2
Query: 245 RSSTVGPGARKENGDFIPVQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILAKIE 421
R +VG G + G V+VGD+VLLP YGG+ + + E+EY L+R+ ++LA I+
Sbjct: 47 RVISVGKGGYNKEGKLAQPSVAVGDRVLLPAYGGSNIKV--GEEEYSLYRDHELLAIIK 103
Score = 36.7 bits (81), Expect = 0.003
Identities = 15/27 (55%), Positives = 22/27 (81%)
Frame = +1
Query: 127 AVKRLVPLLDRVLIKRAEAITKTAGGL 207
+ K +VPLLDR+L++R +A TKTA G+
Sbjct: 7 SAKSIVPLLDRILVQRIKADTKTASGI 33
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = +3
Query: 165 DQKS*SYNQNCRRIVIPEKAQSKVLHGEVVRSVLEPEKKMETSS 296
D + ++Q C R+ + E + K+ HG++ + + E + M+ +S
Sbjct: 921 DMEDDQFSQRCERMALREAERRKLRHGKLQKHLDETKADMQFTS 964
>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 440 LTCDSNSVSLVVACANETLIWSCFFV 517
LT SN+VS A + W+CFFV
Sbjct: 253 LTMGSNTVSWTEAEQKRRVYWACFFV 278
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -3
Query: 248 FSV*NLGLSLLWDDNPPAVLVIASALLI 165
FSV N+G + +D N PA+L + S +L+
Sbjct: 340 FSVANIGAGIDFDLNDPAILNVYSHILL 367
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 25.8 bits (54), Expect = 5.8
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = +2
Query: 341 GGTKVSLENDEKEYHLFRESDILAKIEN*MMVALTCDSNSVSLVVACANETLIWSCFFVR 520
GG+ S N +Y L+RE K+E+ MM SN V+ C N ++SC FV+
Sbjct: 857 GGSSNSA-NISSQYRLWRE-----KLESEMM---RVSSNDDYQVLVCENLVGLFSCVFVK 907
>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 25.4 bits (53), Expect = 7.7
Identities = 8/29 (27%), Positives = 18/29 (62%)
Frame = -1
Query: 166 SGHGPEEEPIVLLHWPFRFLINRIQKRRI 80
S + P+E + L WPF+ + + ++ R++
Sbjct: 7 SKNSPKEATVPELDWPFKLIKSHLETRKL 35
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 7.7
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Frame = +3
Query: 111 NRNGQCSKTIGSSSGPCPDQKS*SYNQNCRRIVIPEKAQSKVLHGEVVRSVLEPEK-KME 287
N C K S G PD N + + QS+ H E R + EPEK K E
Sbjct: 103 NVKTHCPKRSASCCGKKPDVMPLKINLESQTDFMGMPLQSQRPHSESYRMLPEPEKFKSE 162
Query: 288 TSSPFKLVWVIK 323
P + + + K
Sbjct: 163 YGYPSQFLPIEK 174
>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 433
Score = 25.4 bits (53), Expect = 7.7
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +3
Query: 201 RIVIPEKAQSKVLHGEVVRSVLEPEKKMETSS 296
++V+P Q +H VV ++ PE+ E+ +
Sbjct: 137 QLVVPNNFQQMFIHHPVVDTIYSPEESSESQA 168
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 25.4 bits (53), Expect = 7.7
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +3
Query: 219 KAQSKVLHGEVVRSVLEPEKKMETSSPFK 305
+AQ LH E+++S + + + +PFK
Sbjct: 369 QAQLNALHKELIKSFFDASNEFPSDTPFK 397
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,495,513
Number of Sequences: 5004
Number of extensions: 46603
Number of successful extensions: 112
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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