Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060489.seq
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1454 + 26652397-26652501,26653014-26653156,26654013-26654061 63 2e-10
03_03_0057 - 14132854-14133012,14133724-14133837,14134306-14134413 53 2e-07
02_05_0964 - 33133516-33133689,33133780-33133857,33133997-331341... 40 0.002
09_04_0259 - 16182190-16182360,16183185-16183262,16184431-161845... 38 0.010
06_01_0676 + 4945361-4945531,4945632-4945811,4947145-4947300,494... 36 0.030
10_08_0968 + 21933627-21933785,21933893-21933943,21934094-219341... 32 0.37
01_02_0009 - 10135444-10135536,10135860-10135909,10136292-101369... 30 1.5
12_01_0321 + 2447726-2447790,2448114-2448320,2449259-2449392,244... 30 2.0
12_01_0618 - 5099021-5099668,5099701-5100221,5100311-5100352,510... 29 3.4
08_02_1595 - 28114751-28114858,28115018-28115283,28116609-281167... 29 4.5
>07_03_1454 + 26652397-26652501,26653014-26653156,26654013-26654061
Length = 98
Score = 63.3 bits (147), Expect = 2e-10
Identities = 32/54 (59%), Positives = 37/54 (68%)
Frame = +2
Query: 257 VGPGARKENGDFIPVQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILAKI 418
VGPG R ++G IPV + GD VLLPEYGG +V L EKEY LFRE DIL +
Sbjct: 44 VGPGERDKDGKLIPVALKEGDTVLLPEYGGLEVKLA-AEKEYLLFREHDILGTL 96
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +1
Query: 133 KRLVPLLDRVLIKRAEAITKTAGGL 207
+RL+P L+RVL+++ K+AGG+
Sbjct: 3 RRLIPSLNRVLVEKLVQPKKSAGGI 27
>03_03_0057 - 14132854-14133012,14133724-14133837,14134306-14134413
Length = 126
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/42 (61%), Positives = 29/42 (69%)
Frame = +2
Query: 257 VGPGARKENGDFIPVQVSVGDKVLLPEYGGTKVSLENDEKEY 382
VGPG R +G IPV + GD VLLPEYGGT+V L EKEY
Sbjct: 83 VGPGERDRDGKLIPVSLKEGDTVLLPEYGGTEVKLA--EKEY 122
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +1
Query: 127 AVKRLVPLLDRVLIKRAEAITKTAGGL 207
A +RL+P ++RVL+++ K+AGG+
Sbjct: 2 AARRLIPSMNRVLVEKLLQPNKSAGGI 28
>02_05_0964 -
33133516-33133689,33133780-33133857,33133997-33134152,
33134685-33134864,33135516-33135695
Length = 255
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = +2
Query: 257 VGPGARKENGDFIPVQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILA 412
VGPG E G IP+ VS G VL +Y G++ +D Y + R SD++A
Sbjct: 202 VGPGPLDEEGKRIPLSVSAGSTVLYSKYAGSEFK-GSDGTSYIVLRVSDLMA 252
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/25 (68%), Positives = 18/25 (72%)
Frame = +1
Query: 133 KRLVPLLDRVLIKRAEAITKTAGGL 207
K + PL DRVLIK AEA KT GGL
Sbjct: 160 KDMKPLSDRVLIKVAEAEDKTPGGL 184
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1
Query: 139 LVPLLDRVLIKRAEAITKTAGGL 207
L PL DRVL+K A KT GG+
Sbjct: 64 LKPLADRVLVKIKSAEQKTTGGI 86
>09_04_0259 -
16182190-16182360,16183185-16183262,16184431-16184586,
16184913-16185092,16185875-16186027
Length = 245
Score = 37.5 bits (83), Expect = 0.010
Identities = 17/54 (31%), Positives = 33/54 (61%)
Frame = +2
Query: 251 STVGPGARKENGDFIPVQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILA 412
+ VGPG E+G P+ ++ G+ V+ +Y G++ + ++ EY + R SD++A
Sbjct: 191 TAVGPGPLVEDGSRKPLSITPGNTVMYSKYAGSE--FKGEDGEYIVLRVSDVMA 242
Score = 36.7 bits (81), Expect = 0.017
Identities = 20/26 (76%), Positives = 20/26 (76%)
Frame = +1
Query: 130 VKRLVPLLDRVLIKRAEAITKTAGGL 207
VK L PL DRVLIK AEA KTAGGL
Sbjct: 150 VKDLKPLNDRVLIKVAEAEEKTAGGL 175
>06_01_0676 +
4945361-4945531,4945632-4945811,4947145-4947300,
4947460-4947537,4964041-4964214
Length = 252
Score = 35.9 bits (79), Expect = 0.030
Identities = 19/26 (73%), Positives = 20/26 (76%)
Frame = +1
Query: 130 VKRLVPLLDRVLIKRAEAITKTAGGL 207
VK + PL DRVLIK AEA KTAGGL
Sbjct: 156 VKDMKPLNDRVLIKVAEAEDKTAGGL 181
Score = 34.3 bits (75), Expect = 0.091
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +2
Query: 257 VGPGARKENGDFIPVQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILA 412
VGPG + G P+ VS G V+ +Y G++ D Y + R SD++A
Sbjct: 199 VGPGPLDDEGKRQPLSVSAGSTVMYSKYAGSEFK-GADGTNYIVLRVSDVMA 249
>10_08_0968 +
21933627-21933785,21933893-21933943,21934094-21934129,
21935011-21935076,21935163-21935210,21936424-21936453,
21936651-21936719
Length = 152
Score = 32.3 bits (70), Expect = 0.37
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 302 QVSVGDKVLLPEYGGTKVSLENDEKEYHLF-RESDILAKIE 421
+V G KVL + +V L DEK H F RESD+LA +E
Sbjct: 114 EVEAGKKVLFSDINAYEVDLGTDEK--HCFCRESDLLAVVE 152
>01_02_0009 -
10135444-10135536,10135860-10135909,10136292-10136901,
10137891-10138151
Length = 337
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 215 REGSIQGFTRRSSTVGPGARKENGDFIPVQVSVG 316
R G QG+T VG G+ +ENG P +S+G
Sbjct: 266 RSGRPQGYTPSRGRVGRGSARENGRGSPHNISLG 299
>12_01_0321 +
2447726-2447790,2448114-2448320,2449259-2449392,
2449481-2449668,2450204-2450359
Length = 249
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 360 RLTLVPPYSGRRTLSPTLT*TGMKSPFSFRAPGPTVLLLRVK 235
R +V PY+ RR++ P + +G+K P + PT+ L K
Sbjct: 91 RFLIVSPYAARRSIMPKIKTSGVKYPDGWELIEPTLSELHSK 132
>12_01_0618 -
5099021-5099668,5099701-5100221,5100311-5100352,
5100905-5100962
Length = 422
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +3
Query: 108 KNRNGQCSKTIGSSSGPCP 164
K++N +C KT+ SSSGPCP
Sbjct: 236 KDKN-ECLKTMRSSSGPCP 253
>08_02_1595 -
28114751-28114858,28115018-28115283,28116609-28116703,
28117179-28118154,28118245-28118369,28118443-28118569,
28118606-28118843
Length = 644
Score = 28.7 bits (61), Expect = 4.5
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Frame = +2
Query: 203 DCHPREGSIQGFTRRSSTVGPGARKENGDFIPVQVSVGDKV-----LLPEYGGTKVSLEN 367
+CHPR + + S GPG +E+ S G +V L+ + S
Sbjct: 320 ECHPR-------STQPSPKGPGVVRESPPVCSSDASPGGRVETLESLIRAEASRRSSFRA 372
Query: 368 DEKEYHLFRESDILAKIEN*MMVALTCDSNSV 463
E+E HLF + K N +M +TC S SV
Sbjct: 373 LEEE-HLFAPMGVKFKPANLLMQLITCGSISV 403
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,301,886
Number of Sequences: 37544
Number of extensions: 275791
Number of successful extensions: 666
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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