Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060489.seq
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35467| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)              29   4.6  
SB_26814| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   6.1  
SB_44362| Best HMM Match : Transposase_24 (HMM E-Value=6.3)            28   8.1  
SB_18544| Best HMM Match : 7tm_1 (HMM E-Value=0.00082)                 28   8.1  

>SB_35467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 541

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 522 YLTKKHDHINVSFAHATTKLTEL-ESHVKAT 433
           ++T  H H+  S+AHAT+    +  SH  AT
Sbjct: 266 HVTSSHAHVTTSYAHATSSYAHVTSSHAHAT 296


>SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)
          Length = 704

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = +2

Query: 239 TRRSSTVGPGARKENGDFIPVQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESD 403
           +RRS  +  G +   G F    +S+G  V     GG  V    DEKE  L+  SD
Sbjct: 243 SRRSDPINGGRKLGGGVFF---ISIGLAVACVVAGGLTVEYAKDEKESFLYDLSD 294


>SB_26814| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 594

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = -1

Query: 139 IVLLHWPFRFLI 104
           IVLLHWP+RFL+
Sbjct: 177 IVLLHWPWRFLL 188


>SB_44362| Best HMM Match : Transposase_24 (HMM E-Value=6.3)
          Length = 306

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 275 KENGDFIPVQVSVGDKVLLPEYGGTKVSLEN 367
           +E G  +P+++   D+ L P  GG+ V + N
Sbjct: 31  REGGSIVPIRIPYLDEALSPREGGSIVPIRN 61


>SB_18544| Best HMM Match : 7tm_1 (HMM E-Value=0.00082)
          Length = 370

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -1

Query: 463 NRIRITC*SYHHSVFNFRQYVRLSEEMIFFLIIFKAYFSTAVFW 332
           NR  + C  YH ++ N  +Y+ +     + +I+     + AV W
Sbjct: 97  NRAFVVCSLYHVTLLNIDRYIAIKNTFHYPVIVTNQRITIAVVW 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,158,744
Number of Sequences: 59808
Number of extensions: 332062
Number of successful extensions: 787
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)