Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060489.seq
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084153-5|AAK84584.1|  108|Caenorhabditis elegans Hypothetical ...    63   2e-10
AF036705-10|AAB95167.2|  612|Caenorhabditis elegans Hypothetical...    29   2.3  
Z77670-1|CAB01247.1|  484|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U41026-6|AAA82353.1| 1081|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AF022970-6|AAB69899.1|  187|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z81486-5|CAB03987.1|  570|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AF400666-1|AAL28025.1|  481|Caenorhabditis elegans CUX-7 protein.      28   7.1  
AC006605-6|AAK85446.2|  495|Caenorhabditis elegans Clk-2 upstrea...    28   7.1  
Z70034-14|CAC44294.1|  356|Caenorhabditis elegans Hypothetical p...    27   9.4  
Z70034-13|CAC44293.1|  350|Caenorhabditis elegans Hypothetical p...    27   9.4  
Z49910-11|CAC44292.1|  356|Caenorhabditis elegans Hypothetical p...    27   9.4  
Z49910-10|CAC44291.1|  350|Caenorhabditis elegans Hypothetical p...    27   9.4  

>AC084153-5|AAK84584.1|  108|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.10 protein.
          Length = 108

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 29/52 (55%), Positives = 38/52 (73%)
 Frame = +2

Query: 254 TVGPGARKENGDFIPVQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDIL 409
           + G G R E G+ + + V  GD+VLLPEYGGTKV +E  +KEY +FRESD+L
Sbjct: 55  SAGAGLRNEKGELVALTVKPGDRVLLPEYGGTKVVVE--DKEYSIFRESDLL 104



 Score = 34.7 bits (76), Expect = 0.062
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = +1

Query: 121 ANAVKRLVPLLDRVLIKRAEAITKTAGGL 207
           +N +K   PL DRVL++R  A TKT GG+
Sbjct: 10  SNVLKTFKPLYDRVLVERVAAETKTKGGI 38


>AF036705-10|AAB95167.2|  612|Caenorhabditis elegans Hypothetical
           protein F37C4.1 protein.
          Length = 612

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 418 NFRQ-YVRLSEEMIFFLIIFKAYFSTAVFWKKNFITHTNLNGDEVS 284
           NF + Y+RLS   I  L++   + +  V  K   + H N +G ++S
Sbjct: 288 NFEKWYLRLSSTSIGLLVVALFFINIVVINKDQILDHVNFSGKDIS 333


>Z77670-1|CAB01247.1|  484|Caenorhabditis elegans Hypothetical
           protein W05E10.1 protein.
          Length = 484

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 421 FNFRQYVRLSEEMIFFLIIFKAYFSTAVFWKK 326
           FN   Y  +S EM+ FLII     ST +FWK+
Sbjct: 434 FNSSGYTWVSVEMLTFLII--GALSTCIFWKQ 463


>U41026-6|AAA82353.1| 1081|Caenorhabditis elegans Hypothetical
           protein C28G1.4 protein.
          Length = 1081

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = +3

Query: 201 RIVIPEKAQSKVLHGEVVRSVLEPEKKMETS 293
           +I++P++A  +++    +++VLEPE  ME +
Sbjct: 536 KIILPDEAVPRIVEEMSIKTVLEPEVTMEVT 566


>AF022970-6|AAB69899.1|  187|Caenorhabditis elegans Hypothetical
           protein F13A2.5 protein.
          Length = 187

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
 Frame = +3

Query: 183 YNQNCRRIVIPEKAQSKVLHGEVVRSVLEPEKK-----METSSPFKLVWVIKFFFQNTAV 347
           Y+ N   +V  + +   V H E V   LE E +     + + SP + +WV +   QN  +
Sbjct: 46  YSSN--HLVFEKTSPISVCHYEDVMMTLESEMEGLDGYIASLSPEEQIWVKEDALQNEQL 103

Query: 348 LK*ALKMMRKNIISSESLTYWRKL 419
           +K A+  MRK    +++ T +R++
Sbjct: 104 VKEAVPWMRKE--EAQATTKYRQM 125


>Z81486-5|CAB03987.1|  570|Caenorhabditis elegans Hypothetical
           protein C53A5.6 protein.
          Length = 570

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +2

Query: 224 SIQGFTRRSSTVGPGARKENGDFIPVQVS-VGDKVLLPEYGGTKVSLENDEKEYH 385
           S+Q +  +   + P  RK + + I  ++  + D + L +  GT++   N+E E H
Sbjct: 208 SLQNYFEKHEKLSPPGRKTHFNNIEAEMEKISDTIALVKDAGTRLDFLNNEIEEH 262


>AF400666-1|AAL28025.1|  481|Caenorhabditis elegans CUX-7 protein.
          Length = 481

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 469 SCSVRK*NVDMVVFFCEVLILSQLQ 543
           SC VR+ N+D V+F  E+L L  +Q
Sbjct: 69  SCKVRESNIDSVIFEAELLSLGIMQ 93


>AC006605-6|AAK85446.2|  495|Caenorhabditis elegans Clk-2 upstream,
           human gene xe7related protein 7 protein.
          Length = 495

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 469 SCSVRK*NVDMVVFFCEVLILSQLQ 543
           SC VR+ N+D V+F  E+L L  +Q
Sbjct: 69  SCKVRESNIDSVIFEAELLSLGIMQ 93


>Z70034-14|CAC44294.1|  356|Caenorhabditis elegans Hypothetical
           protein C18E9.11b protein.
          Length = 356

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = -1

Query: 463 NRIRITC*SYHHSVFNFRQYVRLSEEMIFFLIIFKAYFST---AVFWKKNFITHTNLNGD 293
           NRI  T      S+F F +  +L E+++  +  F  Y+ST     F +  FI  +N  G 
Sbjct: 161 NRILTTVQKCQRSIFIFDEADKLPEQLLGAIKPFLDYYSTISGVDFRRSIFILLSNKGGG 220

Query: 292 EVS 284
           E++
Sbjct: 221 EIA 223


>Z70034-13|CAC44293.1|  350|Caenorhabditis elegans Hypothetical
           protein C18E9.11a protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = -1

Query: 463 NRIRITC*SYHHSVFNFRQYVRLSEEMIFFLIIFKAYFST---AVFWKKNFITHTNLNGD 293
           NRI  T      S+F F +  +L E+++  +  F  Y+ST     F +  FI  +N  G 
Sbjct: 155 NRILTTVQKCQRSIFIFDEADKLPEQLLGAIKPFLDYYSTISGVDFRRSIFILLSNKGGG 214

Query: 292 EVS 284
           E++
Sbjct: 215 EIA 217


>Z49910-11|CAC44292.1|  356|Caenorhabditis elegans Hypothetical
           protein C18E9.11b protein.
          Length = 356

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = -1

Query: 463 NRIRITC*SYHHSVFNFRQYVRLSEEMIFFLIIFKAYFST---AVFWKKNFITHTNLNGD 293
           NRI  T      S+F F +  +L E+++  +  F  Y+ST     F +  FI  +N  G 
Sbjct: 161 NRILTTVQKCQRSIFIFDEADKLPEQLLGAIKPFLDYYSTISGVDFRRSIFILLSNKGGG 220

Query: 292 EVS 284
           E++
Sbjct: 221 EIA 223


>Z49910-10|CAC44291.1|  350|Caenorhabditis elegans Hypothetical
           protein C18E9.11a protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = -1

Query: 463 NRIRITC*SYHHSVFNFRQYVRLSEEMIFFLIIFKAYFST---AVFWKKNFITHTNLNGD 293
           NRI  T      S+F F +  +L E+++  +  F  Y+ST     F +  FI  +N  G 
Sbjct: 155 NRILTTVQKCQRSIFIFDEADKLPEQLLGAIKPFLDYYSTISGVDFRRSIFILLSNKGGG 214

Query: 292 EVS 284
           E++
Sbjct: 215 EIA 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,787,716
Number of Sequences: 27780
Number of extensions: 263737
Number of successful extensions: 688
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)