Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060489.seq
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    25   0.89 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    25   0.89 
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   3.6  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   4.7  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.3  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 239 TRRSSTVGPGARKENGDFIPVQVSVGDKVLLPEYGGTKVSLEN 367
           T R +   PG   ++GD  P Q  V  KV  P+      +LEN
Sbjct: 327 TARENPGPPGVPGDHGDHAPKQTEVRFKVHDPKAHSKGGTLEN 369


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 239 TRRSSTVGPGARKENGDFIPVQVSVGDKVLLPEYGGTKVSLEN 367
           T R +   PG   ++GD  P Q  V  KV  P+      +LEN
Sbjct: 327 TARENPGPPGVPGDHGDHAPKQTEVRFKVHDPKAHSKGGTLEN 369


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 536 SCNTCISYYNNN 571
           SCN   +YYNNN
Sbjct: 310 SCNYSNNYYNNN 321


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = -3

Query: 170 LIRTRSRRGTNRFTALAISIFN*QNSKAKNMSTMNA 63
           +IR+RSRR + RF++  +   +  +S++ + S + +
Sbjct: 16  IIRSRSRRYSKRFSSSIVDRRSPSSSRSPSPSLLTS 51


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 90  F*ILLIKNRNGQCSKTIGSSSGPCP 164
           F  LL K RNG    T+ +++  CP
Sbjct: 289 FDCLLKKERNGPTQTTLNATTLFCP 313


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 90  F*ILLIKNRNGQCSKTIGSSSGPCP 164
           F  LL K RNG    T+ +++  CP
Sbjct: 379 FDCLLKKERNGPTQTTLNATTLFCP 403


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,961
Number of Sequences: 438
Number of extensions: 3245
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)