Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060489.seq
(685 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g14980.1 68414.m01790 10 kDa chaperonin (CPN10) identical to ... 69 2e-12
At1g23100.1 68414.m02888 10 kDa chaperonin, putative similar to ... 66 3e-11
At5g20720.2 68418.m02461 20 kDa chaperonin, chloroplast (CPN21) ... 38 0.005
At5g20720.1 68418.m02460 20 kDa chaperonin, chloroplast (CPN21) ... 38 0.005
At2g26530.1 68415.m03183 expressed protein 29 3.8
At1g72120.1 68414.m08336 proton-dependent oligopeptide transport... 29 3.8
>At1g14980.1 68414.m01790 10 kDa chaperonin (CPN10) identical to
SP:P34893 from [Arabidopsis thaliana]
Length = 98
Score = 69.3 bits (162), Expect = 2e-12
Identities = 32/54 (59%), Positives = 39/54 (72%)
Frame = +2
Query: 257 VGPGARKENGDFIPVQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILAKI 418
VGPG+R ++G IPV V GD VLLPEYGGT+V L E EYHLFR+ D+L +
Sbjct: 44 VGPGSRDKDGKLIPVSVKEGDTVLLPEYGGTQVKL--GENEYHLFRDEDVLGTL 95
>At1g23100.1 68414.m02888 10 kDa chaperonin, putative similar to 10
kDa chaperonin SP:P34893 from [Arabidopsis thaliana]
Length = 97
Score = 65.7 bits (153), Expect = 3e-11
Identities = 35/67 (52%), Positives = 44/67 (65%)
Frame = +2
Query: 218 EGSIQGFTRRSSTVGPGARKENGDFIPVQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRE 397
E S Q + R VGPGAR G+ IPV V GD VLLPE+GGT+V L EKE+ L+R+
Sbjct: 31 EKSSQLNSGRVIAVGPGARDRAGNLIPVSVKEGDNVLLPEFGGTQVKL--GEKEFLLYRD 88
Query: 398 SDILAKI 418
DI+A +
Sbjct: 89 EDIMATL 95
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 133 KRLVPLLDRVLIKRAEAITKTAGGL 207
KRL+P L+RVL+++ +KT G+
Sbjct: 3 KRLIPTLNRVLVEKILPPSKTVSGI 27
>At5g20720.2 68418.m02461 20 kDa chaperonin, chloroplast (CPN21)
(CHCPN10) (CPN20) identical to chloroplast 20 kDa
chaperonin, chloroplast precursor (Protein Cpn21),
chloroplast protein Cpn10, chloroplast chaperonin 10
(Ch-CPN10), SP|O65282 from [Arabidopsis thaliana];
identical to cDNA chaperonin 20 GI:14587372
Length = 253
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = +2
Query: 257 VGPGARKENGDFIPVQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILA 412
VGPG+ E G P+ VS G VL +Y G D Y R SD++A
Sbjct: 200 VGPGSLDEEGKITPLPVSTGSTVLYSKYAGNDFK-GKDGSNYIALRASDVMA 250
Score = 34.7 bits (76), Expect = 0.058
Identities = 18/26 (69%), Positives = 19/26 (73%)
Frame = +1
Query: 130 VKRLVPLLDRVLIKRAEAITKTAGGL 207
+K L PL DRV IK AEA KTAGGL
Sbjct: 157 IKDLKPLNDRVFIKVAEAEEKTAGGL 182
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 145 PLLDRVLIKRAEAITKTAGGL 207
PL DRVL+K EA KT GG+
Sbjct: 64 PLGDRVLVKIKEAEEKTLGGI 84
>At5g20720.1 68418.m02460 20 kDa chaperonin, chloroplast (CPN21)
(CHCPN10) (CPN20) identical to chloroplast 20 kDa
chaperonin, chloroplast precursor (Protein Cpn21),
chloroplast protein Cpn10, chloroplast chaperonin 10
(Ch-CPN10), SP|O65282 from [Arabidopsis thaliana];
identical to cDNA chaperonin 20 GI:14587372
Length = 253
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = +2
Query: 257 VGPGARKENGDFIPVQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILA 412
VGPG+ E G P+ VS G VL +Y G D Y R SD++A
Sbjct: 200 VGPGSLDEEGKITPLPVSTGSTVLYSKYAGNDFK-GKDGSNYIALRASDVMA 250
Score = 34.7 bits (76), Expect = 0.058
Identities = 18/26 (69%), Positives = 19/26 (73%)
Frame = +1
Query: 130 VKRLVPLLDRVLIKRAEAITKTAGGL 207
+K L PL DRV IK AEA KTAGGL
Sbjct: 157 IKDLKPLNDRVFIKVAEAEEKTAGGL 182
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 145 PLLDRVLIKRAEAITKTAGGL 207
PL DRVL+K EA KT GG+
Sbjct: 64 PLGDRVLVKIKEAEEKTLGGI 84
>At2g26530.1 68415.m03183 expressed protein
Length = 317
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 201 RIVIPEKAQSKVLHGE-VVRSVLEPEKKMETSSPFKL 308
+I+ P +S + HG+ ++R P KK + PF++
Sbjct: 116 QILSPRSPRSPIAHGKNIIRKAFSPRKKPDNVDPFEV 152
>At1g72120.1 68414.m08336 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 1095
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +1
Query: 106 LKIEMANAVKRLVPLLDRVLIKRAEAITKTAGGLSSQRRL 225
L++ ++ ++ VP+ DRVL+ +ITK G+++ +R+
Sbjct: 900 LQVLISISIVLFVPIYDRVLVPIGRSITKDPCGITTLKRI 939
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +1
Query: 106 LKIEMANAVKRLVPLLDRVLIKRAEAITKTAGGLSSQRRL 225
L++ + ++ VP+ DRV + A ITK G+++ +R+
Sbjct: 362 LQVFIGISIVLFVPIYDRVFVPIARLITKEPCGITTLKRI 401
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,789,447
Number of Sequences: 28952
Number of extensions: 238646
Number of successful extensions: 604
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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