Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060488.seq
         (686 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    25   0.58 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   4.1  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    21   7.2  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    21   9.5  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   9.5  
AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    21   9.5  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    21   9.5  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    21   9.5  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -3

Query: 237 AVILTRTSPAFGGSTSISSMDSGLPASHATAAKHLITLP 121
           A ILT+TSP      + +S  S   +   TAA HL   P
Sbjct: 148 APILTKTSPTPVSINNNTSTSSSASSPSVTAAPHLRDSP 186


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 482 CQMALGDSA*RTGTLPFHGLFNIQSVHSC 568
           C +A GD+   T  + +HG  N  + + C
Sbjct: 476 CNIAFGDAVLYTIHMGYHGFHNPFTCNMC 504


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 235 RDLNAHFTGFWRVHFNLLD 179
           R +NAH +G   V  NLLD
Sbjct: 55  RYMNAHLSGIQLVVRNLLD 73


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 392 TSHSATHVNSA*IRKLICARRF 457
           T+H  TH      R  +C RRF
Sbjct: 38  TAHVRTHSGEKPFRCPVCDRRF 59


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 392 TSHSATHVNSA*IRKLICARRF 457
           T+H  TH      R  +C RRF
Sbjct: 294 TAHVRTHSGEKPFRCPVCDRRF 315


>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 192 SISSMDSGLPASHATAAKHLITL 124
           ++S++  G    H TA  H+IT+
Sbjct: 146 TLSALLEGFTLYHTTAYLHIITM 168


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 192 SISSMDSGLPASHATAAKHLITL 124
           ++S++  G    H TA  H+IT+
Sbjct: 146 TLSALLEGFTLYHTTAYLHIITM 168


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 192 SISSMDSGLPASHATAAKHLITL 124
           ++S++  G    H TA  H+IT+
Sbjct: 146 TLSALLEGFTLYHTTAYLHIITM 168


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,238
Number of Sequences: 336
Number of extensions: 3403
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)