Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060488.seq
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...   113   3e-26
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...   109   5e-25
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo...    33   0.029
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    28   1.1  
SPBC2G2.09c |crs1|mug17|meiosis specific cyclin Crs1|Schizosacch...    26   4.4  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    26   4.4  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    25   7.8  

>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score =  113 bits (271), Expect = 3e-26
 Identities = 48/88 (54%), Positives = 59/88 (67%)
 Frame = +1

Query: 256 DAYTLSGKDPEGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKFCLNPK 435
           DAYTLSG DPEG FP+VL                +V+PGDHV+ LY P+C  CKFC + K
Sbjct: 50  DAYTLSGVDPEGAFPIVLGHEGAGIVESIGEGVINVRPGDHVILLYTPECKECKFCRSGK 109

Query: 436 TNLCQKVRSTQGQGVMPDGTRRFRLKDR 519
           TNLC K+R TQG+G+MPDGT RF  +D+
Sbjct: 110 TNLCSKIRETQGRGLMPDGTSRFSCRDK 137



 Score = 65.7 bits (153), Expect = 6e-12
 Identities = 31/48 (64%), Positives = 36/48 (75%)
 Frame = +2

Query: 110 MSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCH 253
           MS  GK I C AAVAW A +PLSIE+I+V PPKA EVRVK+  + VCH
Sbjct: 1   MSFEGKTITCKAAVAWGAKEPLSIEDIQVAPPKAHEVRVKVDWSAVCH 48



 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 19/37 (51%), Positives = 28/37 (75%)
 Frame = +3

Query: 510 KGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKV 620
           + + L H+MGCS+FSQYTVV +ISL  ++ +APL  +
Sbjct: 135 RDKTLLHYMGCSSFSQYTVVADISLVAISHSAPLRSI 171



 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +2

Query: 617 SFVLLGCGVPTGYGA 661
           S  LLGCGV TG+GA
Sbjct: 170 SICLLGCGVTTGFGA 184


>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score =  109 bits (261), Expect = 5e-25
 Identities = 47/83 (56%), Positives = 59/83 (71%)
 Frame = +1

Query: 256 DAYTLSGKDPEGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKFCLNPK 435
           DAYTLSGKDPEG+FPV+L               T+V+ GD V+ LY P+C TCKFC + K
Sbjct: 53  DAYTLSGKDPEGLFPVILGHEGAGIVESVGPQVTTVQVGDPVIALYTPECKTCKFCKSGK 112

Query: 436 TNLCQKVRSTQGQGVMPDGTRRF 504
           TNLC ++R+TQG+G+MPDGT RF
Sbjct: 113 TNLCGRIRTTQGKGLMPDGTSRF 135



 Score = 65.7 bits (153), Expect = 6e-12
 Identities = 27/46 (58%), Positives = 34/46 (73%)
 Frame = +2

Query: 116 TVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCH 253
           T GK+I C AAVAW+   PLSIE ++V PP+  EVR+KI  +GVCH
Sbjct: 6   TAGKIINCKAAVAWQPAAPLSIENVQVFPPRVHEVRIKIVNSGVCH 51



 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 22/36 (61%), Positives = 26/36 (72%)
 Frame = +3

Query: 513 GQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKV 620
           G  L HFMGCSTFS+YTVV +IS+  +   APLD V
Sbjct: 139 GNTLLHFMGCSTFSEYTVVADISVVAIERLAPLDSV 174



 Score = 30.3 bits (65), Expect = 0.27
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +2

Query: 617 SFVLLGCGVPTGYGAA 664
           S  LLGCG+ TGYGAA
Sbjct: 173 SVCLLGCGITTGYGAA 188


>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
           Adh1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 350

 Score = 33.5 bits (73), Expect = 0.029
 Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +2

Query: 134 KCLAAVAWEAGKPLSI--EEIEVDPPKAGEVRVKITATGVCHMTRIHS 271
           K LAAV    G P ++  EE+ V  P   EV V I  TGVCH T +H+
Sbjct: 6   KQLAAVFHTHGGPENVKFEEVPVAEPGQDEVLVNIKYTGVCH-TDLHA 52


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 355 TSVKPGDHVVPLYVPQCNTCKFCLNPKTNLC 447
           +S+KPGD V       C  C +C + + NLC
Sbjct: 81  SSLKPGDPVAVEPGCVCRLCDYCRSGRYNLC 111


>SPBC2G2.09c |crs1|mug17|meiosis specific cyclin
           Crs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 229

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 12  LIGF*YFVTS--SSKRFIARL*FQHFVIGSCPVQSCQQ 119
           L+ F  +V S  S + F+  L FQH    S P +SC Q
Sbjct: 177 LLNFDIYVISLPSVESFLTPLIFQHVFFKSLPSESCDQ 214


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 312 SQYYRKHSLRIFSGECIRVIWQTP 241
           +Q+Y K ++R +  E  R IW+ P
Sbjct: 686 TQFYDKFNIRFYICEVFRTIWKQP 709


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 134 KCLAAVAWEAGKPL-SIEEIEVDPPKAGEVRVKITATG 244
           K ++ +AWE  KPL + E+I  D   +GE+ V  T +G
Sbjct: 63  KVISCIAWEQ-KPLYASEQITTDISGSGEILVLGTNSG 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,805,708
Number of Sequences: 5004
Number of extensions: 55785
Number of successful extensions: 144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)