Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060488.seq
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1209 + 34948899-34948938,34949086-34949222,34949854-349499... 91 8e-19
11_01_0688 - 5667539-5667655,5667792-5667953,5668084-5668179,566... 81 8e-16
11_01_0689 - 5678227-5678343,5678475-5678636,5678751-5678846,567... 80 2e-15
11_01_0686 - 5635207-5635323,5635483-5635644,5635727-5635822,563... 76 2e-14
03_01_0635 - 4660692-4660737,4660783-4660829,4661371-4661507,466... 60 2e-09
10_01_0344 - 3777610-3777758,3777870-3777959,3778950-3779025,377... 59 4e-09
03_01_0636 - 4664472-4664588,4664695-4664856,4664984-4665061,466... 56 2e-08
02_05_0070 - 25584690-25584806,25585151-25585312,25585396-255854... 56 3e-08
08_01_0065 + 452383-452629,452733-452868,453049-453118,453237-45... 48 5e-06
03_01_0633 - 4649267-4649383,4649480-4649641,4649735-4649895,465... 45 7e-05
07_03_1306 - 25643469-25643609,25644008-25644169,25644496-256446... 40 0.001
03_01_0012 - 101584-101898,102274-102531,102932-103474 37 0.017
10_08_0923 + 21597593-21597629,21598089-21598135,21598253-215983... 29 2.6
07_03_1757 + 29250163-29250349,29250612-29250813,29250898-292510... 28 6.0
01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,467... 28 6.0
>02_05_1209 +
34948899-34948938,34949086-34949222,34949854-34949900,
34949990-34950315,34950640-34950722,34950801-34950876,
34951499-34951656,34951979-34952140,34952235-34952351
Length = 381
Score = 91.1 bits (216), Expect = 8e-19
Identities = 56/149 (37%), Positives = 72/149 (48%), Gaps = 6/149 (4%)
Frame = +1
Query: 256 DAYTLSGKDPEGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKFCLNPK 435
D YT SGKDPEG+FP +L T V+PGDHV+P Y +C CKFC + K
Sbjct: 52 DHYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGK 111
Query: 436 TNLCQKVRSTQGQGVMPDGTRRFRLKDRNSTISWVVQHSVSTQLF*KFLSV------KLQ 597
TNLC KVR+ G GVM + K R S + H + T F ++ V K+
Sbjct: 112 TNLCGKVRAATGVGVMMNDR-----KSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIN 166
Query: 598 RRLH*IKFCFAGMRCTYRLWSRLNTXKVE 684
+ K C G + L + NT KVE
Sbjct: 167 PQAPLDKVCLLGCGVSTGLGAVWNTAKVE 195
Score = 70.9 bits (166), Expect = 9e-13
Identities = 30/47 (63%), Positives = 39/47 (82%)
Frame = +2
Query: 113 STVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCH 253
ST G+VI C AAVAWEA +P++IE+++V PP+AGEVRVKI T +CH
Sbjct: 4 STQGQVITCKAAVAWEANRPMTIEDVQVAPPQAGEVRVKILFTALCH 50
>11_01_0688 -
5667539-5667655,5667792-5667953,5668084-5668179,
5668278-5668339,5668434-5668509,5668612-5668694,
5668807-5669132,5669741-5669787,5669900-5670036,
5670135-5670168
Length = 379
Score = 81.0 bits (191), Expect = 8e-16
Identities = 37/48 (77%), Positives = 41/48 (85%)
Frame = +2
Query: 110 MSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCH 253
M+T GKVIKC AAVAWEAGKPLSIEE+EV PP+A EVRVKI T +CH
Sbjct: 1 MATAGKVIKCKAAVAWEAGKPLSIEEVEVAPPQAMEVRVKILYTALCH 48
Score = 58.0 bits (134), Expect = 7e-09
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Frame = +1
Query: 256 DAYTLSGKDPEGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKFCLNPK 435
D Y K VFP +L T + PGDHV+P++ +C C C + +
Sbjct: 50 DVYFWEAKGQTPVFPRILGHEAGGIVESVGEGVTELAPGDHVLPVFTGECKECDHCKSEE 109
Query: 436 TNLCQKVRSTQGQGVM-PDGTRRFRLKDR 519
+N+C +R +GVM DG RF +K +
Sbjct: 110 SNMCDLLRINVDRGVMIGDGKSRFTIKGK 138
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/38 (52%), Positives = 28/38 (73%)
Frame = +3
Query: 507 LKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKV 620
+KG+ ++HF+G STFS+YTV+ L K+ APLDKV
Sbjct: 135 IKGKPIFHFVGTSTFSEYTVIHVGCLAKINPEAPLDKV 172
>11_01_0689 -
5678227-5678343,5678475-5678636,5678751-5678846,
5679345-5679406,5679648-5679723,5679847-5679929,
5680525-5680853,5681402-5681448,5681707-5681843,
5682093-5682126
Length = 380
Score = 79.8 bits (188), Expect = 2e-15
Identities = 36/48 (75%), Positives = 41/48 (85%)
Frame = +2
Query: 110 MSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCH 253
M+T GKVIKC AAVAWEAGKPLSIEE+EV PP+A EVR+KI T +CH
Sbjct: 1 MATAGKVIKCKAAVAWEAGKPLSIEEVEVAPPQAMEVRLKILYTALCH 48
Score = 57.2 bits (132), Expect = 1e-08
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +1
Query: 256 DAYTLSGKDPEGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKFCLNPK 435
D Y K VFP + T + PGDHV+P++ +C C+ CL+ +
Sbjct: 50 DVYFWEAKGQTPVFPRIFGHEAGGIVESVGEGVTELSPGDHVLPVFTGECGDCRHCLSEE 109
Query: 436 TNLCQKVRSTQGQGVM-PDGTRRF 504
+NLC +R +G M DG RF
Sbjct: 110 SNLCDLLRINTDRGAMIGDGQTRF 133
Score = 48.4 bits (110), Expect = 5e-06
Identities = 22/36 (61%), Positives = 27/36 (75%)
Frame = +3
Query: 513 GQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKV 620
GQ +YHF+G STFS+YTVV + K+ AAPLDKV
Sbjct: 138 GQPVYHFLGTSTFSEYTVVHVGCVAKIHPAAPLDKV 173
>11_01_0686 -
5635207-5635323,5635483-5635644,5635727-5635822,
5635903-5635964,5636046-5636121,5636201-5636283,
5636369-5636694,5637524-5637570,5637668-5637804,
5638064-5638097
Length = 379
Score = 76.2 bits (179), Expect = 2e-14
Identities = 35/48 (72%), Positives = 39/48 (81%)
Frame = +2
Query: 110 MSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCH 253
M+T GKVIKC AAVAWEA KPL IEE+EV PP+A EVRVKI T +CH
Sbjct: 1 MATAGKVIKCKAAVAWEAAKPLVIEEVEVAPPQAMEVRVKILFTSLCH 48
Score = 54.8 bits (126), Expect = 6e-08
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Frame = +1
Query: 256 DAYTLSGKDPEGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKFCLNPK 435
D Y K VFP + T + PGDHV+P++ +C C C + +
Sbjct: 50 DVYFWEAKGQTPVFPRIFGHEAGGIVESVGEGVTDLAPGDHVLPVFTGECKECAHCKSAE 109
Query: 436 TNLCQKVRSTQGQGVM-PDGTRRFRLKDR 519
+N+C +R +GVM DG RF + +
Sbjct: 110 SNMCDLLRINTDRGVMIGDGKSRFSINGK 138
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/38 (52%), Positives = 28/38 (73%)
Frame = +3
Query: 507 LKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKV 620
+ G+ +YHF+G STFS+YTV+ + K+ AAPLDKV
Sbjct: 135 INGKPIYHFVGTSTFSEYTVMHVGCVAKINPAAPLDKV 172
>03_01_0635 -
4660692-4660737,4660783-4660829,4661371-4661507,
4661661-4661697
Length = 88
Score = 60.1 bits (139), Expect = 2e-09
Identities = 26/41 (63%), Positives = 32/41 (78%)
Frame = +2
Query: 131 IKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCH 253
I+C AAV AG+PL++EEI VDPPKA EVR+KI T +CH
Sbjct: 9 IRCKAAVCRAAGEPLAVEEIVVDPPKAHEVRIKIVCTSLCH 49
>10_01_0344 -
3777610-3777758,3777870-3777959,3778950-3779025,
3779206-3779288,3780456-3780799,3782064-3782113,
3782406-3782542,3782692-3782776
Length = 337
Score = 58.8 bits (136), Expect = 4e-09
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Frame = +1
Query: 295 FPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKFCLNPKTNLCQKVRSTQGQ 474
FP +L + PGDHVVP++ +C C +C + K+NLC+ R +
Sbjct: 81 FPRILGHEAAGVVESVGEGVEDLAPGDHVVPIFTGECGACTYCESSKSNLCKTYRVNPFK 140
Query: 475 GVM-PDGTRRFRLKDRNSTISWVVQHSVSTQLF 570
M DG RF + DR+S V H ++T F
Sbjct: 141 STMVTDGGTRFTMIDRSSGARNPVYHFLNTSTF 173
Score = 53.6 bits (123), Expect = 1e-07
Identities = 26/52 (50%), Positives = 33/52 (63%)
Frame = +2
Query: 98 SSAVMSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCH 253
+ A T GK IKC AAVA G+ L +EE+EV PP EVR+K+ T +CH
Sbjct: 14 NGAGADTKGKPIKCKAAVAHGPGEALVMEEVEVAPPARMEVRLKVLFTSICH 65
Score = 35.9 bits (79), Expect = 0.030
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 522 LYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKV 620
+YHF+ STF++YTV+ K+ APL+K+
Sbjct: 164 VYHFLNTSTFAEYTVIDSACAVKINPKAPLEKM 196
>03_01_0636 -
4664472-4664588,4664695-4664856,4664984-4665061,
4665157-4665221,4665476-4665558,4666052-4666414,
4666512-4666555,4666632-4666765,4666881-4666917
Length = 360
Score = 56.4 bits (130), Expect = 2e-08
Identities = 25/43 (58%), Positives = 31/43 (72%)
Frame = +2
Query: 125 KVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCH 253
K I+C AAV A +PL +EEI VDPPKA E+R+KI T +CH
Sbjct: 7 KPIRCKAAVCRAASEPLIVEEIVVDPPKAYEIRIKIICTSLCH 49
Score = 47.6 bits (108), Expect = 9e-06
Identities = 31/88 (35%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Frame = +1
Query: 244 SLPYDAYTLSGK-DPEGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKF 420
SL + TL K DP FP +L + GD VVP ++ QC++C
Sbjct: 46 SLCHTDVTLWHKVDP--AFPRILGHEAYGVVESVGENVEGLAAGDTVVPTFMGQCDSCAS 103
Query: 421 CLNPKTNLCQKVRSTQGQGVMPDGTRRF 504
C TN C V T G G+ DGT RF
Sbjct: 104 CAAEWTNQCTAVPFTMGPGMRRDGTTRF 131
>02_05_0070 -
25584690-25584806,25585151-25585312,25585396-25585491,
25585894-25585955,25586035-25586110,25586195-25586277,
25586456-25586778,25586882-25586928,25587014-25587150,
25587250-25587322,25588159-25588251,25588543-25588632,
25588684-25588786,25588869-25588981,25589181-25589778,
25589888-25590065,25590277-25590296,25590713-25590882,
25591245-25591485,25592997-25593199
Length = 994
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/49 (48%), Positives = 33/49 (67%)
Frame = +2
Query: 104 AVMSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVC 250
A S+ I C AAVAW G+ L +EE+EV PP+A E+RVK+ +T +C
Sbjct: 615 AAASSPAAAITCRAAVAWAPGQALVMEEVEVAPPEAMEIRVKVVSTSIC 663
Score = 48.0 bits (109), Expect = 7e-06
Identities = 21/56 (37%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Frame = +1
Query: 355 TSVKPGDHVVPLYVPQCNTCKFCLNPKTNLCQKVRSTQGQGVM-PDGTRRFRLKDR 519
T + GDHV+ +++ +C +CK C++ K+N+CQK+ + +GVM D RF L+ +
Sbjct: 699 TEFEVGDHVLTVFIGECMSCKHCVSGKSNMCQKL-GLERRGVMHSDQKTRFSLRGK 753
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +3
Query: 507 LKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKV 620
L+G+ +YH+ S+FS+YTVV KV P+D++
Sbjct: 750 LRGKPVYHYCAVSSFSEYTVVHSGCAVKVGPTVPMDRI 787
>08_01_0065 +
452383-452629,452733-452868,453049-453118,453237-453330,
453426-453639,453756-453897,454076-454246,454586-454780
Length = 422
Score = 48.4 bits (110), Expect = 5e-06
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +2
Query: 146 AVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCH 253
AV WE G+PL++E+ + PKAGE+ +K A GVCH
Sbjct: 53 AVFWEPGRPLTLEDFRMPRPKAGELLIKTKACGVCH 88
Score = 35.1 bits (77), Expect = 0.053
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 370 GDHVVPLYVPQCNTCKFCLNPKTNLCQKVRS-TQGQGVMPDGTRRFRLKDRNSTI 531
G HVV ++ C C +C+ + +LC+ + + +G + DG R L+ +
Sbjct: 132 GSHVVGAFIMPCGNCFYCVKGQEDLCESFFAYNRAKGTLYDGQTRLFLRSNGKPV 186
>03_01_0633 -
4649267-4649383,4649480-4649641,4649735-4649895,
4650056-4650080,4650155-4650237,4650332-4650704
Length = 306
Score = 44.8 bits (101), Expect = 7e-05
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = +1
Query: 370 GDHVVPLYVPQCNTCKFCLNPKTNLCQKVRSTQGQGVMPDGTRRFR 507
GD VVP ++ QC C C + ++N+C R G+ DGT RFR
Sbjct: 31 GDPVVPTFLGQCTECVDCASERSNVCSTYRFAVRPGMPRDGTARFR 76
Score = 33.1 bits (72), Expect = 0.21
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 513 GQELYHFMGCSTFSQYTVVLEISLCKVAEAAP 608
G ++HF+G S+FS+YTVV + +V A P
Sbjct: 80 GAPIHHFLGVSSFSEYTVVDANQVVRVDPAVP 111
>07_03_1306 -
25643469-25643609,25644008-25644169,25644496-25644659,
25645117-25645192,25645569-25645651,25646393-25646669
Length = 300
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = +1
Query: 379 VVPLYVPQCNTCKFCLNPKTNLCQKVRSTQGQGVMP-DGTRRF 504
VVP++ QC+ C CL+ ++NLC K+ + G+MP D T RF
Sbjct: 2 VVPVFAAQCSECPDCLSDRSNLCSKLPNV--AGLMPRDRTTRF 42
>03_01_0012 - 101584-101898,102274-102531,102932-103474
Length = 371
Score = 36.7 bits (81), Expect = 0.017
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +2
Query: 128 VIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGV 247
V+KC+ + L E++EV PK GE+R+K TA GV
Sbjct: 46 VVKCIRVHELGGPEVLRWEQVEVGEPKEGEIRIKNTAIGV 85
>10_08_0923 +
21597593-21597629,21598089-21598135,21598253-21598391,
21598449-21598562,21599206-21599432,21599578-21599835,
21600014-21600304,21600766-21600830,21601116-21601299,
21601857-21601964
Length = 489
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 173 LSIEEIEVDPPKAGEVRVKITATGV 247
L+ EE+E+ P GE+R+K A GV
Sbjct: 30 LTWEEVEIGEPSEGEIRIKNKAIGV 54
>07_03_1757 +
29250163-29250349,29250612-29250813,29250898-29251008,
29251112-29251160,29251247-29251353,29251439-29251942,
29252486-29252614,29252865-29253161,29253274-29253720,
29253828-29253893,29254109-29254169,29254314-29254463,
29254555-29254689,29254791-29254818,29255430-29255479
Length = 840
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/64 (23%), Positives = 28/64 (43%)
Frame = +2
Query: 65 TIISTFCDWQLSSAVMSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATG 244
T I CD L+ + T G V K ++W P ++ +E G+ V+++
Sbjct: 347 TFIREVCDLPLAEDIPITSGSVRKGKRLISWRPDMPSTLYWVEAQ--DGGDANVEVSPRD 404
Query: 245 VCHM 256
+ +M
Sbjct: 405 IVYM 408
>01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,
4675953-4676072,4676185-4676313,4676394-4676442,
4676899-4676970,4677574-4677707,4677798-4677915,
4678332-4678541,4678630-4678942,4679539-4679632,
4679854-4679962,4680243-4680514,4680597-4680724,
4680832-4681066,4681570-4681758,4681845-4682128,
4682218-4682398,4682486-4682728,4682904-4682986,
4683119-4683227,4687996-4688091,4688675-4688764,
4688881-4689129,4689233-4689412,4690179-4690250,
4691385-4691474,4691605-4691705,4691794-4691959
Length = 1757
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 464 VERTFWHKLVFGFKQNLHVLHCGTYRGT 381
V + WH+LV G L ++ G+ RGT
Sbjct: 1112 VPSSIWHRLVAGLNAQLRLVRRGSLRGT 1139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,177,307
Number of Sequences: 37544
Number of extensions: 408858
Number of successful extensions: 997
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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