Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060488.seq
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   5e-12
SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.38 
SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)            30   2.0  
SB_37040| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_33746| Best HMM Match : MAM (HMM E-Value=8.4e-13)                   29   3.5  
SB_37880| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  

>SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 32/41 (78%), Positives = 33/41 (80%)
 Frame = +2

Query: 131 IKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCH 253
           I C AAVAWE  KPLSIE IEV PPKA EVR+KI ATGVCH
Sbjct: 2   ITCQAAVAWEPKKPLSIETIEVAPPKAHEVRIKILATGVCH 42



 Score = 37.9 bits (84), Expect = 0.008
 Identities = 18/38 (47%), Positives = 20/38 (52%)
 Frame = +1

Query: 256 DAYTLSGKDPEGVFPVVLXXXXXXXXXXXXXXXTSVKP 369
           DAYTLSG DPEG+FP +L               T VKP
Sbjct: 44  DAYTLSGVDPEGLFPCILGHEGGGIVESVGEGVTKVKP 81


>SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 395

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 358 SVKPGDHVVPLYVPQCNTCKFCLNPKTNLCQKVRSTQGQGVMPDG 492
           +V  GD VV      CNTCK C   + + C+K  +    GV  +G
Sbjct: 122 NVSIGDRVVVNPNSSCNTCKACRRGQPHFCEKGGTGSAIGVWKNG 166


>SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 348

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 361 VKPGDHVVPLYVPQCNTCKFCLNPKTNLCQKVRSTQGQGVMPDG 492
           V  GD VV   +  C  C FCL  + +LC+        G+  +G
Sbjct: 75  VSVGDRVVINPLTSCGICDFCLKGQPHLCKVEGKNTAIGIKRNG 118


>SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)
          Length = 303

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = +1

Query: 298 PVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKFCLNPKTNLCQKV 456
           P+VL               + +K GD V       C TC +C   + NLC K+
Sbjct: 52  PMVLGHESSGVICAVGEGVSDLKEGDRVAIEPGTPCRTCSYCKKGRYNLCAKM 104


>SB_37040| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 117 QSVK*LSAWPQSRGKQASRCPSRRLKWTRQKPVKCALRSRPPESAI*RVY 266
           QS   L+  P +RG Q +    R  KW  + P KC ++ +  E+ + RV+
Sbjct: 3   QSGNALTPLPHTRGIQTNTLLLR--KWAVEAPSKCRMKGQTKEAVVQRVH 50


>SB_33746| Best HMM Match : MAM (HMM E-Value=8.4e-13)
          Length = 618

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -3

Query: 294 HSLRIFSGECIRVIWQTPVAVILTRTSPAFGGSTSISSMDSGLPASHAT 148
           H+L +FS  C +   + P   ++ +    FGG T  S  + G P S +T
Sbjct: 241 HTLDVFSNNCTK---KGPTVTLIRKGKYIFGGFTDRSWRNHGAPESSST 286


>SB_37880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 240 VAVILTRTSPAFGGSTSISSMDSGLPASHATAAKHLITLPTVDMTALDN 94
           V+V     S + G  +S SS    +P+S  +      T+PT DM A  N
Sbjct: 3   VSVAENTPSSSSGDPSSHSSQSQSVPSSMDSGGSTAATVPTQDMVAFAN 51


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,954,281
Number of Sequences: 59808
Number of extensions: 466411
Number of successful extensions: 1048
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)