Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060488.seq
         (686 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578808-1|AAT07313.1|  458|Anopheles gambiae saxophone protein.       25   3.0  
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    23   6.8  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    23   9.0  

>AY578808-1|AAT07313.1|  458|Anopheles gambiae saxophone protein.
          Length = 458

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -3

Query: 477 TLTLSRTNLLAQISFRIQAEFTCVALWDVQRYY 379
           T+ L   N+L  +   + +  +C  LW +  YY
Sbjct: 197 TVLLRHENILGYVGSDMTSRNSCTQLWLITHYY 229


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 23.4 bits (48), Expect = 6.8
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -2

Query: 316 HVPVLQETLPQDLFRRVYTRHMADSGGRDLNAHF 215
           H P L+  LP  LFR    R+   S    L+  +
Sbjct: 244 HHPALEIALPSSLFRASRVRNELPSAPNSLSVRY 277


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +3

Query: 156 GKQASRCPSRRLKWTR--QKPVKCALRS 233
           G+Q  RC SRR K T+  ++  + ALR+
Sbjct: 297 GRQHDRCDSRRWKTTQFNRQSFRVALRA 324


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 734,871
Number of Sequences: 2352
Number of extensions: 15078
Number of successful extensions: 81
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 69413730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)