Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060488.seq
(686 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025722-1|AAK68507.1| 554|Caenorhabditis elegans Hypothetical ... 116 2e-26
U18781-1|AAB03374.1| 384|Caenorhabditis elegans alcohol dehydro... 115 4e-26
AC006663-4|AAF39899.1| 384|Caenorhabditis elegans Hypothetical ... 115 4e-26
AC006663-3|AAL32231.1| 386|Caenorhabditis elegans Hypothetical ... 115 4e-26
Z81570-3|CAB04603.1| 351|Caenorhabditis elegans Hypothetical pr... 33 0.14
Z81570-2|CAB04604.1| 349|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z81534-5|CAB04348.2| 694|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z47074-2|CAA87377.2| 694|Caenorhabditis elegans Hypothetical pr... 29 2.4
U97408-3|AAB93343.1| 339|Caenorhabditis elegans Hypothetical pr... 29 3.1
U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeas... 28 7.2
Z68337-10|CAA92753.1| 647|Caenorhabditis elegans Hypothetical p... 27 9.5
Z35595-7|CAD57684.1| 133|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z35595-6|CAA84637.1| 682|Caenorhabditis elegans Hypothetical pr... 27 9.5
AL032641-8|CAA21650.1| 647|Caenorhabditis elegans Hypothetical ... 27 9.5
>AC025722-1|AAK68507.1| 554|Caenorhabditis elegans Hypothetical
protein Y50D4C.2 protein.
Length = 554
Score = 116 bits (278), Expect = 2e-26
Identities = 50/83 (60%), Positives = 56/83 (67%)
Frame = +1
Query: 256 DAYTLSGKDPEGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKFCLNPK 435
DAYTL G DPEG+FPVVL T PGDHVVPLYVPQC C++C NPK
Sbjct: 224 DAYTLDGHDPEGLFPVVLGHEGSGIVESVGKGVTGFAPGDHVVPLYVPQCKECEYCKNPK 283
Query: 436 TNLCQKVRSTQGQGVMPDGTRRF 504
TN+CQK+R +QG G MPDGT RF
Sbjct: 284 TNMCQKIRVSQGDGFMPDGTSRF 306
Score = 62.1 bits (144), Expect = 4e-10
Identities = 26/36 (72%), Positives = 32/36 (88%)
Frame = +3
Query: 513 GQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKV 620
G++L+HFMGCSTFS+YTVV +ISLCKV APL+KV
Sbjct: 310 GKQLFHFMGCSTFSEYTVVADISLCKVNPQAPLEKV 345
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +2
Query: 626 LLGCGVPTGYGA 661
LLGCG+ TGYGA
Sbjct: 347 LLGCGISTGYGA 358
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 132 LSAWPQSRGKQASRCPSRRLKWTRQKPVKCALR 230
+ A P S G Q +R KW +KP K AL+
Sbjct: 181 IPARPPSPGAQKLHSRLKRSKWLHRKPTKFALK 213
>U18781-1|AAB03374.1| 384|Caenorhabditis elegans alcohol
dehydrogenase protein.
Length = 384
Score = 115 bits (276), Expect = 4e-26
Identities = 50/83 (60%), Positives = 56/83 (67%)
Frame = +1
Query: 256 DAYTLSGKDPEGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKFCLNPK 435
DAYTL G DPEG+FPVVL T PGDHVVPLYVPQC C++C NPK
Sbjct: 51 DAYTLDGHDPEGLFPVVLGHEGSGIVESVGEGVTGFAPGDHVVPLYVPQCKECEYCKNPK 110
Query: 436 TNLCQKVRSTQGQGVMPDGTRRF 504
TNLCQK+R +QG G MPDG+ RF
Sbjct: 111 TNLCQKIRISQGNGFMPDGSSRF 133
Score = 68.9 bits (161), Expect = 3e-12
Identities = 33/47 (70%), Positives = 35/47 (74%)
Frame = +2
Query: 113 STVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCH 253
ST G+VI C AAVAW A PLSIE I+V PPKA EVRVKI T VCH
Sbjct: 3 STAGQVINCKAAVAWSAKAPLSIETIQVAPPKAHEVRVKILYTAVCH 49
Score = 63.7 bits (148), Expect = 1e-10
Identities = 35/68 (51%), Positives = 45/68 (66%)
Frame = +3
Query: 417 ILLESEN*FVPEGSFYSRSRCDARWH*AIPLKGQELYHFMGCSTFSQYTVVLEISLCKVA 596
I + N F+P+GS SR C+ G++L+HFMGCSTFS+YTVV +ISLCKV
Sbjct: 117 IRISQGNGFMPDGS--SRFTCN----------GKQLFHFMGCSTFSEYTVVADISLCKVN 164
Query: 597 EAAPLDKV 620
APL+KV
Sbjct: 165 PEAPLEKV 172
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +2
Query: 626 LLGCGVPTGYGA 661
LLGCG+ TGYGA
Sbjct: 174 LLGCGISTGYGA 185
>AC006663-4|AAF39899.1| 384|Caenorhabditis elegans Hypothetical
protein H24K24.3a protein.
Length = 384
Score = 115 bits (276), Expect = 4e-26
Identities = 50/83 (60%), Positives = 56/83 (67%)
Frame = +1
Query: 256 DAYTLSGKDPEGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKFCLNPK 435
DAYTL G DPEG+FPVVL T PGDHVVPLYVPQC C++C NPK
Sbjct: 51 DAYTLDGHDPEGLFPVVLGHEGSGIVESVGEGVTGFAPGDHVVPLYVPQCKECEYCKNPK 110
Query: 436 TNLCQKVRSTQGQGVMPDGTRRF 504
TNLCQK+R +QG G MPDG+ RF
Sbjct: 111 TNLCQKIRISQGNGFMPDGSSRF 133
Score = 68.9 bits (161), Expect = 3e-12
Identities = 33/47 (70%), Positives = 35/47 (74%)
Frame = +2
Query: 113 STVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCH 253
ST G+VI C AAVAW A PLSIE I+V PPKA EVRVKI T VCH
Sbjct: 3 STAGQVINCKAAVAWSAKAPLSIETIQVAPPKAHEVRVKILYTAVCH 49
Score = 63.7 bits (148), Expect = 1e-10
Identities = 35/68 (51%), Positives = 45/68 (66%)
Frame = +3
Query: 417 ILLESEN*FVPEGSFYSRSRCDARWH*AIPLKGQELYHFMGCSTFSQYTVVLEISLCKVA 596
I + N F+P+GS SR C+ G++L+HFMGCSTFS+YTVV +ISLCKV
Sbjct: 117 IRISQGNGFMPDGS--SRFTCN----------GKQLFHFMGCSTFSEYTVVADISLCKVN 164
Query: 597 EAAPLDKV 620
APL+KV
Sbjct: 165 PEAPLEKV 172
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +2
Query: 626 LLGCGVPTGYGA 661
LLGCG+ TGYGA
Sbjct: 174 LLGCGISTGYGA 185
>AC006663-3|AAL32231.1| 386|Caenorhabditis elegans Hypothetical
protein H24K24.3b protein.
Length = 386
Score = 115 bits (276), Expect = 4e-26
Identities = 50/83 (60%), Positives = 56/83 (67%)
Frame = +1
Query: 256 DAYTLSGKDPEGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKFCLNPK 435
DAYTL G DPEG+FPVVL T PGDHVVPLYVPQC C++C NPK
Sbjct: 53 DAYTLDGHDPEGLFPVVLGHEGSGIVESVGEGVTGFAPGDHVVPLYVPQCKECEYCKNPK 112
Query: 436 TNLCQKVRSTQGQGVMPDGTRRF 504
TNLCQK+R +QG G MPDG+ RF
Sbjct: 113 TNLCQKIRISQGNGFMPDGSSRF 135
Score = 63.7 bits (148), Expect = 1e-10
Identities = 33/49 (67%), Positives = 35/49 (71%), Gaps = 2/49 (4%)
Frame = +2
Query: 113 STVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVK--ITATGVCH 253
ST G+VI C AAVAW A PLSIE I+V PPKA EVRVK I T VCH
Sbjct: 3 STAGQVINCKAAVAWSAKAPLSIETIQVAPPKAHEVRVKFQILYTAVCH 51
Score = 63.7 bits (148), Expect = 1e-10
Identities = 35/68 (51%), Positives = 45/68 (66%)
Frame = +3
Query: 417 ILLESEN*FVPEGSFYSRSRCDARWH*AIPLKGQELYHFMGCSTFSQYTVVLEISLCKVA 596
I + N F+P+GS SR C+ G++L+HFMGCSTFS+YTVV +ISLCKV
Sbjct: 119 IRISQGNGFMPDGS--SRFTCN----------GKQLFHFMGCSTFSEYTVVADISLCKVN 166
Query: 597 EAAPLDKV 620
APL+KV
Sbjct: 167 PEAPLEKV 174
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +2
Query: 626 LLGCGVPTGYGA 661
LLGCG+ TGYGA
Sbjct: 176 LLGCGISTGYGA 187
>Z81570-3|CAB04603.1| 351|Caenorhabditis elegans Hypothetical
protein K12G11.4 protein.
Length = 351
Score = 33.5 bits (73), Expect = 0.14
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 164 GKPLSIEEIEVDPPKAGEVRVKITATGVCH 253
G PL + ++ V P+ E+ VKI +G+CH
Sbjct: 19 GGPLEVRQVSVPQPQENELLVKIEYSGICH 48
>Z81570-2|CAB04604.1| 349|Caenorhabditis elegans Hypothetical
protein K12G11.3 protein.
Length = 349
Score = 30.7 bits (66), Expect = 1.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 170 PLSIEEIEVDPPKAGEVRVKITATGVCH 253
PL + ++ V P E+ VKI +G+CH
Sbjct: 20 PLEVRQVPVPSPADDEILVKIEYSGICH 47
>Z81534-5|CAB04348.2| 694|Caenorhabditis elegans Hypothetical
protein F37H8.2 protein.
Length = 694
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +2
Query: 224 VKITATGVCHMTRIHSPE-KILRECFL*YWDMKAAESWRVSVRESLQSSPGTT*YLCTS- 397
+KI + C + I+ P +L + + + D++A S ++S+ S SSP C+S
Sbjct: 432 LKILTSSGCKKSNIYLPSVMLLLKLHILFSDVRATSSTQLSIERSQSSSPSVISSQCSSS 491
Query: 398 -HSATHVNSA*IRKL 439
A V S I K+
Sbjct: 492 DEGAQKVQSTLIPKM 506
>Z47074-2|CAA87377.2| 694|Caenorhabditis elegans Hypothetical
protein F37H8.2 protein.
Length = 694
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +2
Query: 224 VKITATGVCHMTRIHSPE-KILRECFL*YWDMKAAESWRVSVRESLQSSPGTT*YLCTS- 397
+KI + C + I+ P +L + + + D++A S ++S+ S SSP C+S
Sbjct: 432 LKILTSSGCKKSNIYLPSVMLLLKLHILFSDVRATSSTQLSIERSQSSSPSVISSQCSSS 491
Query: 398 -HSATHVNSA*IRKL 439
A V S I K+
Sbjct: 492 DEGAQKVQSTLIPKM 506
>U97408-3|AAB93343.1| 339|Caenorhabditis elegans Hypothetical
protein F48A9.1 protein.
Length = 339
Score = 29.1 bits (62), Expect = 3.1
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = -3
Query: 309 QYYRKHSLRIFSGECIRVIWQTPVAVILTRTSPAFGGSTSISSMDSGL-PASHATAAKHL 133
+YY +HSL + + WQTP++ L P+ GG +S ++ L A T +
Sbjct: 6 RYYYEHSLIEEKTKHQELSWQTPISRSLVTHDPSTGG-IQLSKKNAMLNDAVTTTTTVEV 64
Query: 132 ITLPT-VDMTALDNCQSQNVEIIV 64
PT DM +L + ++V
Sbjct: 65 FRAPTNTDMISLTPASNGGPPLLV 88
>U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 1 protein.
Length = 2500
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -2
Query: 664 SGSITCRYTASQQNKTLSNGAASATLQREISRTTVY*LNVEQPM 533
SGS+T R KT SN + A + + T NV+QPM
Sbjct: 870 SGSVTGRSMGIVGQKTSSNFSVGAPIPGSAAATAAAAANVQQPM 913
>Z68337-10|CAA92753.1| 647|Caenorhabditis elegans Hypothetical
protein M7.5 protein.
Length = 647
Score = 27.5 bits (58), Expect = 9.5
Identities = 20/65 (30%), Positives = 28/65 (43%)
Frame = +2
Query: 32 CYIIE*ALHSSTIISTFCDWQLSSAVMSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKA 211
C+II +L S+ I W L SA S G AV WE ++ I VD K
Sbjct: 234 CHII--SLRSADSIGIKYTWTLPSAECSADGAQNAVPKAVGWERNANDKLQPISVDLSKE 291
Query: 212 GEVRV 226
+ ++
Sbjct: 292 FDPKI 296
>Z35595-7|CAD57684.1| 133|Caenorhabditis elegans Hypothetical
protein C01G6.6b protein.
Length = 133
Score = 27.5 bits (58), Expect = 9.5
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 406 NTCKFCLNPKTNLCQKVRSTQGQGVMPDGTRRF-RLKDRNS 525
N KF LN + LC V S+ G G PD RF R +RNS
Sbjct: 41 NEKKFNLNEE-KLCAIVVSSTGDGDAPDNCARFVRRINRNS 80
>Z35595-6|CAA84637.1| 682|Caenorhabditis elegans Hypothetical
protein C01G6.6a protein.
Length = 682
Score = 27.5 bits (58), Expect = 9.5
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 406 NTCKFCLNPKTNLCQKVRSTQGQGVMPDGTRRF-RLKDRNS 525
N KF LN + LC V S+ G G PD RF R +RNS
Sbjct: 41 NEKKFNLNEE-KLCAIVVSSTGDGDAPDNCARFVRRINRNS 80
>AL032641-8|CAA21650.1| 647|Caenorhabditis elegans Hypothetical
protein M7.5 protein.
Length = 647
Score = 27.5 bits (58), Expect = 9.5
Identities = 20/65 (30%), Positives = 28/65 (43%)
Frame = +2
Query: 32 CYIIE*ALHSSTIISTFCDWQLSSAVMSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKA 211
C+II +L S+ I W L SA S G AV WE ++ I VD K
Sbjct: 234 CHII--SLRSADSIGIKYTWTLPSAECSADGAQNAVPKAVGWERNANDKLQPISVDLSKE 291
Query: 212 GEVRV 226
+ ++
Sbjct: 292 FDPKI 296
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,952,586
Number of Sequences: 27780
Number of extensions: 332220
Number of successful extensions: 821
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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