Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060487.seq
         (683 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   5.4  
DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory pro...    22   5.4  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    21   9.4  

>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 77  RSPLIQHIRLAHSSSRPYWKKNPHL 151
           +SP  +H+RL   ++ P W ++  L
Sbjct: 208 KSPPEKHLRLRRDTAPPQWYQHQPL 232


>DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory
           protein 13 protein.
          Length = 124

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = +3

Query: 408 ACTVAVETVIVDHYNDQLRTLMQDPNVDKEILE 506
           ACT  +     + YND+L   ++   + K   E
Sbjct: 11  ACTNVLSEEYTNQYNDELDAALKSERLMKSYFE 43


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 216 WQSWAAQLKDPSSAHVGPGK 275
           WQS  + L+  SS    PGK
Sbjct: 231 WQSSESSLRPRSSQKSAPGK 250


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,333
Number of Sequences: 336
Number of extensions: 3113
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)