Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060487.seq
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.15c |coq7||ubiquinone biosynthesis protein Coq7|Schizosa...    62   7e-11
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    27   2.5  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   7.7  

>SPBC337.15c |coq7||ubiquinone biosynthesis protein
           Coq7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 62.1 bits (144), Expect = 7e-11
 Identities = 25/42 (59%), Positives = 30/42 (71%)
 Frame = +1

Query: 256 HMWDQEKKHREKFEQLINEYRVRPTVLTPIWNVAGFVLGAGT 381
           HMWDQEK H   F+  + + RVRPT L P W++AGF LGAGT
Sbjct: 81  HMWDQEKYHLATFDNYVLKNRVRPTFLRPFWDIAGFALGAGT 122



 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 25/41 (60%), Positives = 26/41 (63%)
 Frame = +3

Query: 384 LLGKEAAMACTVAVETVIVDHYNDQLRTLMQDPNVDKEILE 506
           LLG +AAMACT AVETVI  HYNDQLR      N   E  E
Sbjct: 124 LLGTKAAMACTEAVETVIGGHYNDQLRETAHLENKAPEFKE 164



 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 17/26 (65%), Positives = 21/26 (80%)
 Frame = +2

Query: 149 LDQIIRVDHAGELGADRIYAGQMAVL 226
           LD +IRVD AGELGA++IY GQ  +L
Sbjct: 43  LDSVIRVDQAGELGANQIYKGQHFIL 68


>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -2

Query: 511 DVSRISLSTFGSCISVRSWSL*WSTITVSTATVQAMAASLPRSLCQLLIQIR-PHSISE 338
           D +  S   F   +S  S     ST    T   +A  A+ P+SL    IQ+  PH++ E
Sbjct: 156 DAASSSAPNFTHTVSSASSQKQGSTSLTDTENQKAHPAAAPQSLTPFYIQVHDPHTVKE 214


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 442 STITVSTATVQAMAASLPRSLCQLLIQIR 356
           S + +ST  +  M+ S+P SLC L    R
Sbjct: 410 SLLDISTGNISNMSLSIPPSLCFLASDFR 438


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,700
Number of Sequences: 5004
Number of extensions: 51365
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)