Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060487.seq
(683 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0277 + 23780779-23781103,23781954-23782363,23782487-237830... 31 1.1
01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853 31 1.1
01_03_0202 - 13762042-13762572 31 1.1
01_01_0888 + 6990354-6991862,6991970-6992431 30 2.0
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 29 2.6
08_02_0492 + 17758827-17759763,17759906-17759910 29 3.4
05_03_0212 + 10260690-10261272,10261921-10262435,10262446-102625... 29 3.4
02_05_1004 + 33444248-33444847 29 3.4
05_03_0002 - 7278527-7279675,7279768-7280325,7280433-7280594 29 4.5
09_01_0066 - 978018-978500,978588-979034,979113-979412,979521-97... 28 6.0
06_03_0345 + 19758188-19758382,19759857-19759952,19760061-197601... 28 7.9
03_01_0246 - 1918935-1919689,1919771-1919819,1919894-1920049 28 7.9
>05_05_0277 +
23780779-23781103,23781954-23782363,23782487-23783016,
23785904-23785991
Length = 450
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -1
Query: 467 CTQLVVVVVNDYRFDGDGAGHGRLFAEEPVPAP 369
C Q V V DGDG G G + EE +P P
Sbjct: 346 CFQSVAAVYRAIAGDGDGGGDGIVIHEESIPLP 378
>01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853
Length = 625
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 502 RISLSTFGSCISVRSWSL*WSTITVSTAT 416
R +S FG C+ V S ++ W T+ ST T
Sbjct: 264 RFPVSAFGICLGVSSQAILWKTVATSTPT 292
>01_03_0202 - 13762042-13762572
Length = 176
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -1
Query: 431 RFDGDGAGHGRLFAEEPVPAPNTNPATFHIGVSTVGLTLYSLMSCSNFSL 282
R G GAG E VPAP + A +GV + L +L +C+ F++
Sbjct: 106 RGSGSGAGWEDSSGEPDVPAPRRSAAEAALGVVYELMCLIALSNCTQFAV 155
>01_01_0888 + 6990354-6991862,6991970-6992431
Length = 656
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 502 RISLSTFGSCISVRSWSL*WSTITVSTAT 416
R +S FG C+ + S ++ W I +ST+T
Sbjct: 264 RFPVSAFGMCMGMSSQAILWKNIAISTST 292
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 425 DGDGAGHGRLFAEEPVPAPNTNPATFHIGVSTV 327
DGDG GR P+P ++NP+T + + T+
Sbjct: 254 DGDGDEEGRRLKPPPMPTSSSNPSTEFLYLGTL 286
>08_02_0492 + 17758827-17759763,17759906-17759910
Length = 313
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -1
Query: 482 WVLHQCTQLVVVVVNDYRFDGDGAGHGRLFAEEPVPAPNTNPATFHIG 339
++L + +VV+V RFD G + L + V P+ +P+T +IG
Sbjct: 122 YLLDDPSNMVVLVGCQARFDVRGGSNNTLISSCTVVCPSPDPSTTYIG 169
>05_03_0212 +
10260690-10261272,10261921-10262435,10262446-10262569,
10262840-10263042,10263169-10263240,10264905-10265007,
10265350-10265582
Length = 610
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -1
Query: 353 TFHIGVSTVGLTLYSL--MSCSNFSLCFFSWSH 261
TF + VGL +YSL SC +FS+ +F W +
Sbjct: 85 TFLVCSKKVGLWIYSLRSFSCKDFSVRYFLWKN 117
>02_05_1004 + 33444248-33444847
Length = 199
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +3
Query: 144 HTLTR*SEWITPVNWARTASTRDKWQSWAAQLK-DPSSAHVGP-GKEAQGE 290
H L R + W P+ W+ + +W WAAQ + D + H P G+ A GE
Sbjct: 67 HNLVRLARWELPLAWSPRLESYARW--WAAQRRGDCALRHSFPEGQFALGE 115
>05_03_0002 - 7278527-7279675,7279768-7280325,7280433-7280594
Length = 622
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 502 RISLSTFGSCISVRSWSL*WSTITVSTAT 416
R +S FG C+ V S ++ W TI S T
Sbjct: 258 RFPVSAFGMCLGVSSQAILWKTIATSGPT 286
>09_01_0066 -
978018-978500,978588-979034,979113-979412,979521-979855,
980325-980703
Length = 647
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 319 VRPTVLTPIWNVAGF-VLGAGTGSSAKRRPWPAPSPSKR 432
V P TP V+ F V+ A + A+RRP P+P+P R
Sbjct: 19 VLPRASTPTGPVSAFLVVDARILTDARRRPPPSPTPPAR 57
>06_03_0345 +
19758188-19758382,19759857-19759952,19760061-19760144,
19760504-19760573,19760934-19761838,19763661-19764287
Length = 658
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 355 AGFVLGAGTGSS-AKRRPWPAPSPSKR 432
AG G G GS +RR WP P+P +R
Sbjct: 317 AGVASGEGGGSRRGERRWWPVPAPPER 343
>03_01_0246 - 1918935-1919689,1919771-1919819,1919894-1920049
Length = 319
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +3
Query: 186 WARTASTRDKWQSWAAQLKDPSSAHVGPGKEAQ 284
W S+R+ W+ + + PS+AH G ++ Q
Sbjct: 253 WWNNISSRESWEYVKSLQRPPSAAHAGNAQQQQ 285
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,666,780
Number of Sequences: 37544
Number of extensions: 408714
Number of successful extensions: 1415
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1412
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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