Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060487.seq
         (683 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13256| Best HMM Match : rve (HMM E-Value=1.1e-17)                   65   4e-11
SB_55915| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   2e-05
SB_30029| Best HMM Match : Extensin_2 (HMM E-Value=0.45)               29   2.7  
SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.6  
SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05)                28   8.1  

>SB_13256| Best HMM Match : rve (HMM E-Value=1.1e-17)
          Length = 321

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 30/39 (76%), Positives = 35/39 (89%)
 Frame = +2

Query: 140 NPHLDQIIRVDHAGELGADRIYAGQMAVLGRTAEGPLIR 256
           N  +D+IIRVDHAGELGADRIYAGQMAVLG++  GPLI+
Sbjct: 30  NDVIDRIIRVDHAGELGADRIYAGQMAVLGKSNIGPLIK 68


>SB_55915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 321

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 20/32 (62%), Positives = 26/32 (81%)
 Frame = +3

Query: 384 LLGKEAAMACTVAVETVIVDHYNDQLRTLMQD 479
           +LGKEAAMACT A+E VI +HY+ QLR L+ +
Sbjct: 253 MLGKEAAMACTEAIEEVIGEHYDSQLRELLSE 284


>SB_30029| Best HMM Match : Extensin_2 (HMM E-Value=0.45)
          Length = 622

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +1

Query: 247 PHPHMWDQEKKHREKFEQLINEYRVRPTVLTPIWNVAGFVLGAGTGSSAKRRPWPAPSP 423
           PHP+M     K   + +Q  N   + P+++ P  N  G     GT ++   +  P  +P
Sbjct: 329 PHPYMMSPSMKPMPQTQQYYNNMGMPPSMMGPSHNPMGMPQRQGTMANQVAKSQPDMTP 387


>SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 35  CGISS--MNLIQKINMRSPLIQHIRLAHSSSRP 127
           C IS+  +N I KIN   P + H+R+   + RP
Sbjct: 294 CSISNKPLNSILKINTSDPALGHLRIPRKNERP 326


>SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05)
          Length = 639

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +1

Query: 70  KHAITTDSTHQIGAQQQSTLLEEKSTP*PDNPSGSRR*IGRGPHLRGTNGSLGPHS*RTP 249
           K+ +T        A+++ TL EE ++P  + P+         P      GS  PH    P
Sbjct: 417 KNVLTIPGAVAAEAEEEETL-EEVTSPSEEQPAEPTPEEHVEPEPTLATGSSNPHHHGNP 475

Query: 250 HPH 258
           HPH
Sbjct: 476 HPH 478


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,726,688
Number of Sequences: 59808
Number of extensions: 437303
Number of successful extensions: 1378
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)