Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060487.seq
         (683 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ252203-1|CAB64656.1|  219|Drosophila melanogaster putative COQ...    84   2e-16
AJ252202-1|CAB64655.1|  219|Drosophila melanogaster putative COQ...    84   2e-16
AE014298-949|AAF46199.2|  219|Drosophila melanogaster CG14437-PA...    84   2e-16
AE014297-365|AAN14326.1|  143|Drosophila melanogaster CG31554-PA...    29   5.9  

>AJ252203-1|CAB64656.1|  219|Drosophila melanogaster putative COQ7
           isologue protein.
          Length = 219

 Score = 83.8 bits (198), Expect = 2e-16
 Identities = 33/42 (78%), Positives = 41/42 (97%)
 Frame = +1

Query: 256 HMWDQEKKHREKFEQLINEYRVRPTVLTPIWNVAGFVLGAGT 381
           HMW+QEK+HR++FEQLI ++RVRPT++TPIWNVAGFVLGAGT
Sbjct: 88  HMWEQEKEHRKQFEQLIQQHRVRPTIMTPIWNVAGFVLGAGT 129



 Score = 78.6 bits (185), Expect = 7e-15
 Identities = 41/89 (46%), Positives = 52/89 (58%)
 Frame = +3

Query: 384 LLGKEAAMACTVAVETVIVDHYNDQLRTLMQDPNVDKEILEXXXXXXXXXXXXXXXXXXX 563
           L+G++AAMACTVAVETVIV+HYNDQLR +M+ PN DKE+L                    
Sbjct: 131 LMGEKAAMACTVAVETVIVEHYNDQLRQIMEAPNPDKELLATITKFRDEEQEHHDTGIDH 190

Query: 564 XXXXXXXXXXLTELIKAGLRAAIQLSKKI 650
                     +TE+IK G + AI +SKKI
Sbjct: 191 GAEQAPFYQAMTEVIKFGCKTAIAISKKI 219



 Score = 60.1 bits (139), Expect = 3e-09
 Identities = 30/44 (68%), Positives = 34/44 (77%)
 Frame = +2

Query: 134 KKNPHLDQIIRVDHAGELGADRIYAGQMAVLGRTAEGPLIRTCG 265
           + N   D+IIRVDHAGELGADRIYAGQMA+LG    GPL +T G
Sbjct: 47  RPNALTDEIIRVDHAGELGADRIYAGQMAILG---NGPLGKTIG 87


>AJ252202-1|CAB64655.1|  219|Drosophila melanogaster putative COQ7
           isologue protein.
          Length = 219

 Score = 83.8 bits (198), Expect = 2e-16
 Identities = 33/42 (78%), Positives = 41/42 (97%)
 Frame = +1

Query: 256 HMWDQEKKHREKFEQLINEYRVRPTVLTPIWNVAGFVLGAGT 381
           HMW+QEK+HR++FEQLI ++RVRPT++TPIWNVAGFVLGAGT
Sbjct: 88  HMWEQEKEHRKQFEQLIQQHRVRPTIMTPIWNVAGFVLGAGT 129



 Score = 78.6 bits (185), Expect = 7e-15
 Identities = 41/89 (46%), Positives = 52/89 (58%)
 Frame = +3

Query: 384 LLGKEAAMACTVAVETVIVDHYNDQLRTLMQDPNVDKEILEXXXXXXXXXXXXXXXXXXX 563
           L+G++AAMACTVAVETVIV+HYNDQLR +M+ PN DKE+L                    
Sbjct: 131 LMGEKAAMACTVAVETVIVEHYNDQLRQIMEAPNPDKELLATITKFRDEEQEHHDTGIDH 190

Query: 564 XXXXXXXXXXLTELIKAGLRAAIQLSKKI 650
                     +TE+IK G + AI +SKKI
Sbjct: 191 GAEQAPFYQAMTEVIKFGCKTAIAISKKI 219



 Score = 60.1 bits (139), Expect = 3e-09
 Identities = 30/44 (68%), Positives = 34/44 (77%)
 Frame = +2

Query: 134 KKNPHLDQIIRVDHAGELGADRIYAGQMAVLGRTAEGPLIRTCG 265
           + N   D+IIRVDHAGELGADRIYAGQMA+LG    GPL +T G
Sbjct: 47  RPNALTDEIIRVDHAGELGADRIYAGQMAILG---NGPLGKTIG 87


>AE014298-949|AAF46199.2|  219|Drosophila melanogaster CG14437-PA
           protein.
          Length = 219

 Score = 83.8 bits (198), Expect = 2e-16
 Identities = 33/42 (78%), Positives = 41/42 (97%)
 Frame = +1

Query: 256 HMWDQEKKHREKFEQLINEYRVRPTVLTPIWNVAGFVLGAGT 381
           HMW+QEK+HR++FEQLI ++RVRPT++TPIWNVAGFVLGAGT
Sbjct: 88  HMWEQEKEHRKQFEQLIQQHRVRPTIMTPIWNVAGFVLGAGT 129



 Score = 78.6 bits (185), Expect = 7e-15
 Identities = 41/89 (46%), Positives = 52/89 (58%)
 Frame = +3

Query: 384 LLGKEAAMACTVAVETVIVDHYNDQLRTLMQDPNVDKEILEXXXXXXXXXXXXXXXXXXX 563
           L+G++AAMACTVAVETVIV+HYNDQLR +M+ PN DKE+L                    
Sbjct: 131 LMGEKAAMACTVAVETVIVEHYNDQLRQIMEAPNPDKELLATITKFRDEEQEHHDTGIDH 190

Query: 564 XXXXXXXXXXLTELIKAGLRAAIQLSKKI 650
                     +TE+IK G + AI +SKKI
Sbjct: 191 GAEQAPFYQAMTEVIKFGCKTAIAISKKI 219



 Score = 60.1 bits (139), Expect = 3e-09
 Identities = 30/44 (68%), Positives = 34/44 (77%)
 Frame = +2

Query: 134 KKNPHLDQIIRVDHAGELGADRIYAGQMAVLGRTAEGPLIRTCG 265
           + N   D+IIRVDHAGELGADRIYAGQMA+LG    GPL +T G
Sbjct: 47  RPNALTDEIIRVDHAGELGADRIYAGQMAILG---NGPLGKTIG 87


>AE014297-365|AAN14326.1|  143|Drosophila melanogaster CG31554-PA
           protein.
          Length = 143

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 9/101 (8%)
 Frame = -1

Query: 383 PVPAPNTNPATFHIGVSTVGLTLYSLMSCSNFSLCFFSWSHMCG*GVLQL---CGPRLPF 213
           P P P + PAT       V     S       +  F  W H+ G G ++      P+   
Sbjct: 12  PAPTPISLPATRSRAQDRV-----SFAQAGRVARSFMYWRHVSGHGFIRWGLEVAPKAGV 66

Query: 212 VP-----RRCG-PRPIHRRDPLGLSGQGVDFSSNKVDCCCA 108
            P     RR   P+P+H   PLG SG+      ++V  C A
Sbjct: 67  TPPHRHNRRANTPKPVHLMTPLGGSGRANVQPQSRVLSCHA 107


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,235,806
Number of Sequences: 53049
Number of extensions: 658784
Number of successful extensions: 2237
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2228
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2992560750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)