Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060487.seq
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13642-9|AAG00035.1|  187|Caenorhabditis elegans Clock (biologic...    58   6e-09
Z92813-1|CAB07286.1|  393|Caenorhabditis elegans Hypothetical pr...    32   0.44 
AL032624-2|CAA21520.2|  447|Caenorhabditis elegans Hypothetical ...    31   0.58 
Z81131-1|CAB03423.4|  464|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z79601-1|CAB01885.2|  716|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z69884-2|CAA93749.1|  298|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U58751-8|AAB00659.2|  635|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>U13642-9|AAG00035.1|  187|Caenorhabditis elegans Clock (biological
           timing) abnormalityprotein 1 protein.
          Length = 187

 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
 Frame = +3

Query: 384 LLGKEAAMACTVAVETVIVDHYNDQLRTLM-QDPNVDKEILEXXXXXXXXXXXXXXXXXX 560
           LLGKE AMACT+AVE +I  HYNDQL+ L+  DP   KE+L+                  
Sbjct: 98  LLGKEGAMACTIAVEELIGQHYNDQLKELLADDPETHKELLKILTRLRDEELHHHDTGVE 157

Query: 561 XXXXXXXXXXXLTELIKAGLRAAIQLSKKI 650
                      L  +I+ G + AI +++KI
Sbjct: 158 HDGMKAPAYSALKWIIQTGCKGAIAIAEKI 187



 Score = 54.0 bits (124), Expect = 9e-08
 Identities = 24/36 (66%), Positives = 32/36 (88%)
 Frame = +2

Query: 149 LDQIIRVDHAGELGADRIYAGQMAVLGRTAEGPLIR 256
           +++IIRVDHAGELGADRIYAGQ+AVL  ++ G +I+
Sbjct: 19  IEKIIRVDHAGELGADRIYAGQLAVLQGSSVGSVIK 54



 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 18/46 (39%), Positives = 30/46 (65%)
 Frame = +1

Query: 259 MWDQEKKHREKFEQLINEYRVRPTVLTPIWNVAGFVLGAGTGSSAK 396
           MWD+EK+H +  E+L  ++ V  TV +P+++VA + LG G+    K
Sbjct: 56  MWDEEKEHLDTMERLAAKHNVPHTVFSPVFSVAAYALGVGSALLGK 101


>Z92813-1|CAB07286.1|  393|Caenorhabditis elegans Hypothetical
           protein T28A8.1 protein.
          Length = 393

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 517 PGDVSRISLSTFGSCISVRSWSL*WSTITVSTATV 413
           P D+S+I    FG+  S+ SW   WS +T  T  V
Sbjct: 357 PKDLSKIRFIDFGALASIESWQSLWSILTGRTQEV 391


>AL032624-2|CAA21520.2|  447|Caenorhabditis elegans Hypothetical
           protein Y49A10A.1 protein.
          Length = 447

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
 Frame = -1

Query: 449 VVVNDYRFDGDGAGHGRLFAEEPVPA------PNTNPATFHIGVS-TVGLTLYSLMSCSN 291
           + VN+   D  G  HGR+F  + VPA      P  + +  ++G    +  T+Y + SC  
Sbjct: 112 ITVNEPFVDNTGYLHGRIFRRQKVPAHNRIGKPYVHWSDLNVGTDINLFQTIYRITSCDT 171

Query: 290 FSLCF 276
           F+  F
Sbjct: 172 FTRSF 176


>Z81131-1|CAB03423.4|  464|Caenorhabditis elegans Hypothetical
           protein T24D1.2 protein.
          Length = 464

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = +1

Query: 49  NEFDSKDKHAITTDSTHQIGAQQQSTLLEEKSTP*PDNPSGSRR*IGRGPHLRG 210
           NE + +    IT  S+      +  +  EE+  P   NP GS    GRGP  RG
Sbjct: 176 NEEEEERNATITISSSESDADSEAESDHEERDMPRAFNPRGSYARSGRGPGGRG 229


>Z79601-1|CAB01885.2|  716|Caenorhabditis elegans Hypothetical
           protein K09A9.4 protein.
          Length = 716

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -2

Query: 262 TCADEGSFSCAAQDC 218
           TC D  SFSCA QDC
Sbjct: 91  TCHDSVSFSCAHQDC 105


>Z69884-2|CAA93749.1|  298|Caenorhabditis elegans Hypothetical
           protein F31F6.2 protein.
          Length = 298

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 353 TFHIGVSTVGLTLYSLMSCSNFSLCFFSWSHMCG 252
           T  +GV  V    Y L   +++   FF W+H CG
Sbjct: 76  TTKVGVPEVDNHTYGLDMFNDYKQFFFQWAHGCG 109


>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 283 CASFPGPTCADEGSFSCAAQDCHLSRVDAVRAQF 182
           C S   PTC+  G F C   +C  + V+A   QF
Sbjct: 39  CRSTCRPTCSSSGGFGC-RMNCQNTCVNACNKQF 71


>U58751-8|AAB00659.2|  635|Caenorhabditis elegans Hypothetical
           protein C07G1.2 protein.
          Length = 635

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -1

Query: 356 ATFHIGVSTVGLTLYSLMSCSNFSLCFFSWSHMCG*GVLQLCGPRL 219
           +TF +  STV L  Y+       S+CF   S  C  GV   C P L
Sbjct: 61  STF-LSYSTVSLQQYTYSVGCTTSVCFTFLSSFCKTGVKVFCSPSL 105


>U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical
           protein K06A9.1c protein.
          Length = 825

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 508 VSRISLSTFGSCISVRSWSL*WSTITVSTATVQAMAASLP 389
           V+ +S STFGS   + S S   ST+TV + +     +S P
Sbjct: 216 VAPVSSSTFGSSTPIASSSSSGSTVTVVSGSSSTYGSSTP 255


>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
           protein K06A9.1a protein.
          Length = 1032

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 508 VSRISLSTFGSCISVRSWSL*WSTITVSTATVQAMAASLP 389
           V+ +S STFGS   + S S   ST+TV + +     +S P
Sbjct: 423 VAPVSSSTFGSSTPIASSSSSGSTVTVVSGSSSTYGSSTP 462


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
           protein K06A9.1b protein.
          Length = 2232

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 508 VSRISLSTFGSCISVRSWSL*WSTITVSTATVQAMAASLP 389
           V+ +S STFGS   + S S   ST+TV + +     +S P
Sbjct: 423 VAPVSSSTFGSSTPIASSSSSGSTVTVVSGSSSTYGSSTP 462


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,872,947
Number of Sequences: 27780
Number of extensions: 310508
Number of successful extensions: 908
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)