Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060487.seq
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    26   0.38 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.3  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 232 HS*RTPHPHMWDQEKKHREKFEQ 300
           H   T HPHM  Q+ +H+ + +Q
Sbjct: 170 HQMHTQHPHMQPQQGQHQSQAQQ 192


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
 Frame = +2

Query: 470  DAGPKRGQGDPGDITRFRDEEQEHHDAG-LQH 562
            D      + DP  +T  R E     DAG L+H
Sbjct: 1779 DVESDESESDPDQLTSSRTESSNQLDAGKLKH 1810


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
 Frame = +2

Query: 470  DAGPKRGQGDPGDITRFRDEEQEHHDAG-LQH 562
            D      + DP  +T  R E     DAG L+H
Sbjct: 1775 DVESDESESDPDQLTSSRTESSNQLDAGKLKH 1806


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,949
Number of Sequences: 438
Number of extensions: 3869
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)