Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060487.seq
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32440.1 68414.m04004 pyruvate kinase, putative similar to py...    30   1.6  
At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pf...    29   2.2  
At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pf...    29   2.2  
At5g24030.1 68418.m02823 C4-dicarboxylate transporter/malic acid...    29   2.9  
At4g38590.1 68417.m05462 glycosyl hydrolase family 35 protein si...    29   2.9  

>At1g32440.1 68414.m04004 pyruvate kinase, putative similar to
           pyruvate kinase isozyme G, chloroplast precursor
           [Nicotiana tabacum] SWISS-PROT:Q40546
          Length = 571

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 47  SMNLIQKINMRSPLIQHIRLAHSSSRPYWK-KNPHLDQIIRVDHAG 181
           S+ L+Q  NM     QH+ L  S S+P W+ ++ HL Q+ ++   G
Sbjct: 527 SLKLLQDENMLKEG-QHVTLVQSGSQPIWREESTHLIQVRKIKIGG 571


>At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pfam
           profile: PF00400 WD domain, G-beta repeat (7 copies)
          Length = 1135

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +2

Query: 191 ADRIYAGQMAVLGRTAEGPLIRTCGTRKRSTGRNLSSSSMS 313
           A+R      A  G  A+GP++ T GT   STG +LS    S
Sbjct: 683 ANRGLDSSRAPPGSVAKGPIVGTFGTPNSSTGMSLSMGERS 723


>At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pfam
           profile: PF00400 WD domain, G-beta repeat (7 copies)
          Length = 1137

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +2

Query: 191 ADRIYAGQMAVLGRTAEGPLIRTCGTRKRSTGRNLSSSSMS 313
           A+R      A  G  A+GP++ T GT   STG +LS    S
Sbjct: 683 ANRGLDSSRAPPGSVAKGPIVGTFGTPNSSTGMSLSMGERS 723


>At5g24030.1 68418.m02823 C4-dicarboxylate transporter/malic acid
           transport family protein weak similarity to SP|P25396
           Tellurite resistance protein tehA. {Escherichia coli};
           contains Pfam profile PF03595: C4-dicarboxylate
           transporter/malic acid transport protein
          Length = 635

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 502 RISLSTFGSCISVRSWSL*WSTITVSTAT 416
           R  +STFG C+ V S ++ W T+  +  T
Sbjct: 257 RYPISTFGMCLGVSSQAIMWKTLATAEPT 285


>At4g38590.1 68417.m05462 glycosyl hydrolase family 35 protein
           similar to beta-galactosidase GI:7939621 from
           [Lycopersicon esculentum]; contains Pfam profile PF01301
           : Glycosyl hydrolases family 35
          Length = 988

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 467 TDAGPKRGQGDPGDITRFRDEEQEHHDAGLQHGAE 571
           +D GP R  GD       + ++ E HDAGL   AE
Sbjct: 876 SDIGPARANGDGNADVNHKFDDFEGHDAGLFANAE 910


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,259,627
Number of Sequences: 28952
Number of extensions: 297015
Number of successful extensions: 887
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)