Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060486.seq
(684 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0702 - 5243064-5243159,5243280-5243331,5243453-5243526,524... 91 8e-19
11_05_0092 + 18984571-18984621,18984717-18984779,18984957-189849... 89 4e-18
03_04_0150 - 17720697-17720800,17721737-17722172 30 2.0
02_04_0607 - 24302582-24303075,24303150-24304197 29 4.5
01_05_0174 + 18919759-18920265,18920381-18920443,18921060-189217... 29 4.5
01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-51... 28 7.9
>02_01_0702 -
5243064-5243159,5243280-5243331,5243453-5243526,
5243633-5243683,5243840-5243899,5244131-5244232,
5244416-5244502,5244759-5244803,5245241-5245283,
5245371-5245499,5245599-5245676,5245762-5245811,
5246026-5246108,5246780-5246843,5246953-5247066,
5247558-5247623,5247713-5247778,5248405-5248446,
5248590-5248652,5248744-5248794
Length = 471
Score = 91.1 bits (216), Expect = 8e-19
Identities = 53/141 (37%), Positives = 69/141 (48%), Gaps = 1/141 (0%)
Frame = +2
Query: 260 VTVDMMYGGMRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPEVFSGF 439
+TVDM+ GGMRG+ G++WETS+LD DEGIRFRGLSIPECQ+ LP A EPLPE
Sbjct: 70 ITVDMVLGGMRGMTGMLWETSLLDPDEGIRFRGLSIPECQKVLPTAVKDGEPLPEGLLWL 129
Query: 440 SSLAIYPPKRK*SAV*R-MGGEGGYRLT*XQC*TXCPANCIPCRSSRLPSPHSTVNLNXL 616
P K + A+ + + + P P V
Sbjct: 130 LLTGKVPTKEQVDALSKELASRSSVPGHVYEAIDALPVTAHPMTQFTTGVMALQVESEFQ 189
Query: 617 KPTQXGVHKSQYWEYVYXDTM 679
K G+ KS++WE Y D +
Sbjct: 190 KAYDKGMSKSKFWEPTYEDCL 210
Score = 64.1 bits (149), Expect = 1e-10
Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Frame = +1
Query: 373 VPTATAQG*GWRRTTTRSLFWLLVTGDIPTEAQVKRCLKN-GRRGRIPAHVVXMLNXMPG 549
+PTA G L WLL+TG +PT+ QV K R +P HV ++ +P
Sbjct: 112 LPTAVKDG----EPLPEGLLWLLLTGKVPTKEQVDALSKELASRSSVPGHVYEAIDALPV 167
Query: 550 KLHPMSQFSAAVTALNSESKXAKAYSXGRAQ 642
HPM+QF+ V AL ES+ KAY G ++
Sbjct: 168 TAHPMTQFTTGVMALQVESEFQKAYDKGMSK 198
Score = 35.1 bits (77), Expect = 0.052
Identities = 13/34 (38%), Positives = 25/34 (73%)
Frame = +3
Query: 153 SAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKV 254
SA +LKS LQE IP++Q+++++ + +HG ++
Sbjct: 34 SASDLDLKSQLQELIPEQQDRLKKLKSEHGKVQL 67
>11_05_0092 +
18984571-18984621,18984717-18984779,18984957-18984998,
18985560-18985625,18985728-18985793,18986277-18986390,
18986592-18986655,18987399-18987481,18987703-18987752,
18987844-18987921,18988020-18988148,18988244-18988286,
18988987-18989073,18989217-18989318,18989556-18989663,
18989750-18989800,18989886-18989959,18990079-18990130,
18990216-18990311
Length = 472
Score = 88.6 bits (210), Expect = 4e-18
Identities = 39/55 (70%), Positives = 47/55 (85%)
Frame = +2
Query: 260 VTVDMMYGGMRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPE 424
+TVDM+ GGMRG+ G++WETS+LD +EGIRFRGLSIPECQ+ LP A G EPLPE
Sbjct: 70 ITVDMVLGGMRGMIGMLWETSLLDPEEGIRFRGLSIPECQKVLPTAIKGGEPLPE 124
Score = 61.7 bits (143), Expect = 5e-10
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +1
Query: 427 LFWLLVTGDIPTEAQVKRCLKN-GRRGRIPAHVVXMLNXMPGKLHPMSQFSAAVTALNSE 603
L WLL+TG +PT+ QV K R +P HV ++ +P HPM+QF+ V AL E
Sbjct: 126 LLWLLLTGKVPTKEQVDALSKELVTRSSVPGHVYKAIDALPVTAHPMTQFTTGVMALQVE 185
Query: 604 SKXAKAYSXG 633
S+ KAY G
Sbjct: 186 SEFQKAYDKG 195
Score = 33.1 bits (72), Expect = 0.21
Identities = 12/34 (35%), Positives = 24/34 (70%)
Frame = +3
Query: 153 SAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKV 254
S +LKS LQE IP++Q+++++ + +HG ++
Sbjct: 34 SPSDLDLKSQLQELIPEQQDRLKKLKSEHGKVQL 67
>03_04_0150 - 17720697-17720800,17721737-17722172
Length = 179
Score = 29.9 bits (64), Expect = 2.0
Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 5/123 (4%)
Frame = -3
Query: 358 TTETDSFIGIQHRGFPNQT-FDSTHATVHHINCDLSTLVEPCFFRNSRIFSCSLGIFSWR 182
T++ + IG+ R + S HA + + + L C R +C + + W
Sbjct: 47 TSDGAAGIGVVIRDHDGSSVLSSWHAVLQYPVQRMWKLALACQIRMKLALACQIRMSLWS 106
Query: 181 ILFKFV----CSALRPRSRTVAVGHAFCNSTSLEDVILNRAIFKAAERKLPHKSRQLARD 14
ILF + SA +++ +G + C L + A + ER L H+SR D
Sbjct: 107 ILFNQIASDDASADINTGKSILMGRSNCIEPGLSALTARGANY---ERALGHQSRVTNHD 163
Query: 13 RSR 5
R R
Sbjct: 164 RWR 166
>02_04_0607 - 24302582-24303075,24303150-24304197
Length = 513
Score = 28.7 bits (61), Expect = 4.5
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +1
Query: 205 NKRRSANSERSMV---PLKSRGHS*YDVRWHAWNQRSGLGNLCAGCR*RNPFPWSIHP*V 375
N R +A S R+ + L H DVR H R G G AG + PF W+ HP +
Sbjct: 63 NIRYNATSGRAGLRFQQLHHHHHGHVDVRHH---HRGGAG---AGGAQQGPFQWADHPRL 116
Query: 376 PTATAQG*GW 405
T A+ GW
Sbjct: 117 VTEAAEN-GW 125
>01_05_0174 +
18919759-18920265,18920381-18920443,18921060-18921761,
18922934-18923068,18923391-18923474,18924095-18924151,
18924290-18924376,18924963-18925205
Length = 625
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 394 G*GWRRTTTRSLFWLLVTGDIPTEAQVKRCL 486
G W+ + TR LF+ D+P E+ + +C+
Sbjct: 217 GGSWKASDTRELFYSFHIDDVPAESVMHKCV 247
>01_01_0066 -
513578-513730,513809-513920,514000-514163,514369-514521,
514598-514736,514823-514923,514995-515666,515953-516038,
516112-516777,516874-517128,517231-517358,518645-518799,
518880-519133,519186-519260,519324-519399,519511-519644,
519871-520153,520692-520850,520940-521038,521142-521310,
521423-521653,522002-522114,524179-524310,524389-524469,
525641-525763
Length = 1570
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 370 RDG*TTETDSFIGIQHRGFPNQTFDSTHATVHH 272
+DG D IG++ + FP + D T A HH
Sbjct: 407 KDGELDSKDLDIGLKRKPFPRKMEDPTSADAHH 439
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,328,549
Number of Sequences: 37544
Number of extensions: 374004
Number of successful extensions: 1085
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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