Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060486.seq
(684 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.) 86 3e-17
SB_28288| Best HMM Match : E-MAP-115 (HMM E-Value=0.076) 34 0.093
SB_27869| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.093
SB_21165| Best HMM Match : LRR_1 (HMM E-Value=6.5e-13) 31 0.87
SB_46097| Best HMM Match : zf-CCHC (HMM E-Value=7.2e-05) 31 1.1
SB_32454| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022) 30 2.0
SB_31131| Best HMM Match : Drf_FH1 (HMM E-Value=2.4) 30 2.0
SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_17534| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.51) 29 3.5
SB_50739| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_15503| Best HMM Match : DUF217 (HMM E-Value=5.3) 29 4.6
SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12) 28 6.1
SB_18023| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_5503| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_23774| Best HMM Match : Kinesin (HMM E-Value=0) 28 6.1
SB_8609| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_48653| Best HMM Match : ABC_membrane (HMM E-Value=0.34) 28 8.1
SB_39652| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35) 28 8.1
SB_16423| Best HMM Match : ATE_C (HMM E-Value=0.00015) 28 8.1
SB_58553| Best HMM Match : rve (HMM E-Value=0.0011) 28 8.1
SB_42142| Best HMM Match : Transposase_35 (HMM E-Value=1.2) 28 8.1
SB_40528| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_1520| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-19) 28 8.1
>SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 85.8 bits (203), Expect = 3e-17
Identities = 40/79 (50%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Frame = +1
Query: 400 GWRRTTTRSLFWLLVTGDIPTEAQVKRCLKN-GRRGRIPAHVVXMLNXMPGKLHPMSQFS 576
G + +FWLL+TG+IPT+ QV K + +P HVV MLN P LHPMSQFS
Sbjct: 25 GGKEPLPEGIFWLLMTGEIPTKQQVDNLSKEWAAKADLPQHVVQMLNNFPDTLHPMSQFS 84
Query: 577 AAVTALNSESKXAKAYSXG 633
AA+TA+N+ESK +AY+ G
Sbjct: 85 AAITAMNTESKFVQAYNKG 103
Score = 42.7 bits (96), Expect = 3e-04
Identities = 38/132 (28%), Positives = 51/132 (38%), Gaps = 1/132 (0%)
Frame = +2
Query: 287 MRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPEVFSGFSSLAIYPPK 466
MRGIKGLV ETS+LD +E LPKA GG+EPLPE P K
Sbjct: 1 MRGIKGLVTETSLLDPEE--------------LLPKADGGKEPLPEGIFWLLMTGEIPTK 46
Query: 467 RK*SAV*R-MGGEGGYRLT*XQC*TXCPANCIPCRSSRLPSPHSTVNLNXLKPTQXGVHK 643
++ + + + Q P P ++ GV+K
Sbjct: 47 QQVDNLSKEWAAKADLPQHVVQMLNNFPDTLHPMSQFSAAITAMNTESKFVQAYNKGVNK 106
Query: 644 SQYWEYVYXDTM 679
+YW Y + D M
Sbjct: 107 KEYWMYCFDDAM 118
>SB_28288| Best HMM Match : E-MAP-115 (HMM E-Value=0.076)
Length = 784
Score = 34.3 bits (75), Expect = 0.093
Identities = 25/86 (29%), Positives = 41/86 (47%)
Frame = +3
Query: 3 ARDRSRASCRDLCGSLRSAALKMALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSI 182
ARDR R RD C S RS++ + L + SS L AT + G ++
Sbjct: 554 ARDRPRERSRDSCSSARSSSRERPLSAMLSSSWDTLPFGTTEATRMREG------RIRES 607
Query: 183 LQEKIPKEQEKIREFRKKHGSTKVER 260
L+E+ +EQ +++E +++ K R
Sbjct: 608 LKERRAREQAELKEEQQRQKKLKSMR 633
>SB_27869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 339
Score = 34.3 bits (75), Expect = 0.093
Identities = 25/86 (29%), Positives = 41/86 (47%)
Frame = +3
Query: 3 ARDRSRASCRDLCGSLRSAALKMALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSI 182
ARDR R RD C S RS++ + L + SS L AT + G ++
Sbjct: 109 ARDRPRERSRDSCSSARSSSRERPLSAMLSSSWDTLPFGTTEATRMREG------RIRES 162
Query: 183 LQEKIPKEQEKIREFRKKHGSTKVER 260
L+E+ +EQ +++E +++ K R
Sbjct: 163 LKERRAREQAELKEEQQRQKKLKSMR 188
>SB_21165| Best HMM Match : LRR_1 (HMM E-Value=6.5e-13)
Length = 1383
Score = 31.1 bits (67), Expect = 0.87
Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 6/144 (4%)
Frame = +3
Query: 108 LQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEK-IREFRKKHGSTKVERS--QLI*C 278
+ P + V++ +A NL L+ +I ++ EK + ++RK H S + Q C
Sbjct: 677 IHSQAPNSHVVIVATNAGHPNLTDALRSQIREDIEKMLAKYRKGHKSNFASEAVPQCALC 736
Query: 279 --TVACVESKVWFGKPLCWMPMKESVSVVYPSLSANSNCPRLRVE-KNHYPKSFLASRHW 449
T C S F + P + S +++ P S V K YPK FL+S++
Sbjct: 737 DETHLCDVSSAQFY--IRGQPGEASGTLLSPDPSIPHIVGYYEVSCKEVYPKVFLSSKNL 794
Query: 450 RYTHRSASKALSKEWAARADTGSR 521
AL E ++ GSR
Sbjct: 795 GLQKLKCGLALKMEVLLSSNVGSR 818
>SB_46097| Best HMM Match : zf-CCHC (HMM E-Value=7.2e-05)
Length = 430
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +2
Query: 263 TVDMMYGGMRG-IKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPEVFS 433
TVD++Y +RG LV + LD E ++F L +CQ P A+ + LP++ +
Sbjct: 254 TVDLLYLFVRGDFTPLVSCDACLDL-EVLQFMNLDFIQCQPTAPDAQDSKHTLPDIIT 310
>SB_32454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1161
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 144 RGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVERSQ 266
RGL E+ +L+ +LQE K + +E ++ HG K+ ++
Sbjct: 544 RGLKVEKEDLERVLQEAGEKVASQQKELKEAHGQRKLAMAE 584
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = -1
Query: 366 MDRPRKRIPSSASSTEVSQTRPLIPRMPPYIIS 268
M P + + ++A+ TE++ T+PL+P P ++S
Sbjct: 366 MPAPTESVVTTATPTEIAVTKPLLPPKPSGLVS 398
>SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)
Length = 1671
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 317 TSVLDADEGIRFRGLSIPECQQQLPKAKGG 406
+S+ DA IRF LS+PE + + PK+ G
Sbjct: 872 SSIFDALRNIRFPRLSLPELEGRFPKSSPG 901
>SB_31131| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)
Length = 407
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = -1
Query: 366 MDRPRKRIPSSASSTEVSQTRPLIPRMPPYIIS 268
M P + + ++A+ TE++ T+PL+P P ++S
Sbjct: 118 MPAPTESVVTTATPTEIAVTKPLLPPKPSGLVS 150
>SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 903
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -1
Query: 342 PSSASSTEVSQTRPLIPRMPPYIISTVTSRL*WNHASFGIRG 217
P S S++ ++ PRMPP++ S+ R + ++S IRG
Sbjct: 804 PGSGSASPARRSFSRFPRMPPFVYSSALIRCVFVYSSALIRG 845
>SB_17534| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.51)
Length = 976
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 174 KSILQEKIPKEQEKIREFRKKHGSTKVE 257
K +++EK P E++K E +KKH S K +
Sbjct: 109 KKVIKEKDPSEKKKDGESKKKHRSEKAK 136
>SB_50739| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 58
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +3
Query: 117 ACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVERSQLI 272
AC V RG +QTNL+ + + P+E++ RK+ +++ R +++
Sbjct: 4 ACALDLVHDRGRRFDQTNLRPMAEVSFPRERQPSEIQRKEASASRETRGRVL 55
>SB_15503| Best HMM Match : DUF217 (HMM E-Value=5.3)
Length = 196
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +3
Query: 117 ACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVERSQLI 272
AC V RG +QTNL+ + + P+E++ RK+ +++ R +++
Sbjct: 4 ACALDLVHDRGRRFDQTNLRPMAEVSFPRERQPSEIQRKEASASRETRGRVL 55
>SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12)
Length = 695
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 356 GLSIPECQQQLPKAKGGEEPLPEVFSGFSSLA 451
GL IP CQ + + E+ P+ +SG+ S+A
Sbjct: 439 GLEIPGCQPGVSQGYQQEQGYPQGYSGYPSMA 470
>SB_18023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 500
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 299 KGLVWETSVLDADEGIRFRGLSIPECQQQL 388
+GL W+ S D D FRGL+IP C ++
Sbjct: 178 RGLPWQAS--DQDVANFFRGLNIPSCVSRM 205
>SB_5503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 298 DSTHATVHHINCDLSTLVEPCF 233
DS + VHHI DL+ +E CF
Sbjct: 57 DSRGSPVHHIEADLANRLEDCF 78
>SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 805
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 75 LFRITSSRLVELQKACPTA-TVLLRGLSAEQTNLKSILQEKIPKEQEKIR 221
L + R+ EL+ A A + + G+ A++ + K++ EKI KE+EK++
Sbjct: 297 LIQTLQKRIKELESAGTQAGSKIDTGMGAKRKDSKAVDPEKIAKEKEKLQ 346
>SB_8609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 985
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = +1
Query: 403 WRRTTTRSLFWLLVTGDIPTEAQVKRCLKNGRRGRIPAHVVXMLNXMPGKLHPMSQFSAA 582
++ T S F L+ T ++P + ++R LK VV L +PG+LH +
Sbjct: 709 YKAMTVHSCFGLM-TAELPDDVLIERSLKK-------EEVVQRLTQLPGRLHKFTSIDIG 760
Query: 583 VTAL 594
T L
Sbjct: 761 DTTL 764
>SB_48653| Best HMM Match : ABC_membrane (HMM E-Value=0.34)
Length = 264
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = -3
Query: 193 FSWRILFKFVC----SALRPRSRTVAVGHAFCNSTSLEDVIL 80
F W +L FV S + PRSR G C STS+ ++L
Sbjct: 135 FDWMLLTCFVIDKLESMITPRSRAAWAGLMKCPSTSISGIML 176
>SB_39652| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 45 SLRSAALKMALFRITSSRLVELQKACPTATVLLR 146
SLR A+ ++ RI S +V L+KA +LLR
Sbjct: 33 SLRKASERVVNLRIASESMVNLRKASERMVILLR 66
>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
Length = 1338
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 189 EKIPKEQEKIREFRKKHGSTKVE 257
E+I QEKI+E RK +GS K E
Sbjct: 924 ERIRLLQEKIKEMRKLYGSLKAE 946
>SB_16423| Best HMM Match : ATE_C (HMM E-Value=0.00015)
Length = 192
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 339 KESVSVVYPSLSAN-SNCPRLRVEKNHYPKSFLASRHWRY 455
KES SV Y + +CP++R + N+YP + +R+
Sbjct: 60 KESASVQYYYMGFYIHSCPKMRYKGNYYPSYLVCPETYRW 99
>SB_58553| Best HMM Match : rve (HMM E-Value=0.0011)
Length = 1745
Score = 27.9 bits (59), Expect = 8.1
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Frame = +3
Query: 12 RSRASCRDLCGSLRSAALKMALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQE 191
RSRAS R L L S+ + +++ S +C TA++ A Q+ + + +E
Sbjct: 402 RSRASWRRLTDVLGSSMVSLSVATTPCSSWARFVFSCMTASISATDPIASQSVISHVSRE 461
Query: 192 KIPK-----EQEKIREFRKKHG 242
+ + + E +R+ R K G
Sbjct: 462 REDRLEQGIQSENMRKLRSKAG 483
>SB_42142| Best HMM Match : Transposase_35 (HMM E-Value=1.2)
Length = 265
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 117 ACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVER 260
AC V RG +QTNL+ + + P+E + E ++K S ER
Sbjct: 4 ACALDLVHDRGRRFDQTNLRPMAEVSFPRELQP-SEIQRKEASASRER 50
>SB_40528| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/67 (22%), Positives = 29/67 (43%)
Frame = +3
Query: 369 LSANSNCPRLRVEKNHYPKSFLASRHWRYTHRSASKALSKEWAARADTGSRSXNVEQXAR 548
++ANS+ R + ++ + RY H ++ L K+WA T + ++
Sbjct: 184 MTANSSKKRAVLAQSWAVPTTTIQHMCRYMHLQKTRKLGKKWARFVGTKRKEFSIGSATA 243
Query: 549 QTASHVA 569
+SH A
Sbjct: 244 HCSSHFA 250
>SB_1520| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-19)
Length = 501
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +3
Query: 426 SFLASRHWRYTHRSASKALSKEWAARADTGSRSXNVEQXARQTASHVAVLGC 581
+F AS H H A SK W+A T + ++ + +T S VA+ GC
Sbjct: 67 TFAASSHPDNAH-FARLYSSKGWSAAEATQGQYLQIDLMSARTVSGVAIQGC 117
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,730,544
Number of Sequences: 59808
Number of extensions: 410153
Number of successful extensions: 1266
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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