Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060486.seq
(684 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z30423-2|CAA83004.1| 468|Caenorhabditis elegans Hypothetical pr... 101 4e-22
AC024799-5|AAO25979.1| 474|Caenorhabditis elegans Hypothetical ... 31 0.77
AC024799-4|AAK72318.1| 536|Caenorhabditis elegans Hypothetical ... 31 0.77
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 29 2.3
AC084158-16|AAK68571.2| 347|Caenorhabditis elegans Hypothetical... 29 4.1
Z69787-10|CAH65466.1| 398|Caenorhabditis elegans Hypothetical p... 28 5.4
U00031-9|AAK18871.1| 470|Caenorhabditis elegans Hypothetical pr... 28 7.1
AF040655-9|AAB95038.1| 288|Caenorhabditis elegans Hypothetical ... 28 7.1
Z68318-4|CAA92693.2| 1170|Caenorhabditis elegans Hypothetical pr... 27 9.4
AF025460-5|AAB70988.5| 584|Caenorhabditis elegans Polh (dna pol... 27 9.4
AB244413-1|BAE72703.1| 584|Caenorhabditis elegans DNA polymeras... 27 9.4
>Z30423-2|CAA83004.1| 468|Caenorhabditis elegans Hypothetical
protein T20G5.2 protein.
Length = 468
Score = 101 bits (243), Expect = 4e-22
Identities = 58/143 (40%), Positives = 73/143 (51%), Gaps = 1/143 (0%)
Frame = +2
Query: 254 REVTVDMMYGGMRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPEVFS 433
+ V +DM+YGGMR +KG+V ETSVLD +EGIRFRG SIPECQ+ LPKAKGGEEPLPE
Sbjct: 63 QNVNIDMIYGGMRSMKGMVTETSVLDPEEGIRFRGYSIPECQKLLPKAKGGEEPLPEAIW 122
Query: 434 GFSSLAIYPPKRK*SAV*R-MGGEGGYRLT*XQC*TXCPANCIPCRSSRLPSPHSTVNLN 610
P + + +A+ + + P N P
Sbjct: 123 WLLCTGDVPSEAQTAAITKEWNARADLPTHVVRMLDNFPDNLHPMAQFIAAIAALNNESK 182
Query: 611 XLKPTQXGVHKSQYWEYVYXDTM 679
GV K+ YWEY Y D+M
Sbjct: 183 FAGAYARGVAKASYWEYAYEDSM 205
Score = 80.6 bits (190), Expect = 1e-15
Identities = 39/82 (47%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Frame = +1
Query: 400 GWRRTTTRSLFWLLVTGDIPTEAQVKRCLKN-GRRGRIPAHVVXMLNXMPGKLHPMSQFS 576
G +++WLL TGD+P+EAQ K R +P HVV ML+ P LHPM+QF
Sbjct: 112 GGEEPLPEAIWWLLCTGDVPSEAQTAAITKEWNARADLPTHVVRMLDNFPDNLHPMAQFI 171
Query: 577 AAVTALNSESKXAKAYSXGRAQ 642
AA+ ALN+ESK A AY+ G A+
Sbjct: 172 AAIAALNNESKFAGAYARGVAK 193
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +3
Query: 69 MALFRITSSRLVELQKACPTATVLLRGLSAE-QTNLKSILQEKIPKEQEKIREFRKKHGS 245
MA+ R+ + ++ + + P +T SAE TNLK +L +KIP K++ FR +HGS
Sbjct: 6 MAIRRLITKGVIPVCQVAPLST------SAEGSTNLKEVLSKKIPAHNAKVKSFRTEHGS 59
Query: 246 TKVE 257
T V+
Sbjct: 60 TVVQ 63
>AC024799-5|AAO25979.1| 474|Caenorhabditis elegans Hypothetical
protein Y49C4A.8b protein.
Length = 474
Score = 31.1 bits (67), Expect = 0.77
Identities = 18/55 (32%), Positives = 31/55 (56%)
Frame = +3
Query: 72 ALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKK 236
++F I S+ + + TV + G+S NLK I ++K+ K+ E++ E RKK
Sbjct: 251 SIFFINSNPFFDFPRPVLQKTVPIGGISV---NLKWIKEQKLTKDWEEVLEMRKK 302
>AC024799-4|AAK72318.1| 536|Caenorhabditis elegans Hypothetical
protein Y49C4A.8a protein.
Length = 536
Score = 31.1 bits (67), Expect = 0.77
Identities = 18/55 (32%), Positives = 31/55 (56%)
Frame = +3
Query: 72 ALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKK 236
++F I S+ + + TV + G+S NLK I ++K+ K+ E++ E RKK
Sbjct: 251 SIFFINSNPFFDFPRPVLQKTVPIGGISV---NLKWIKEQKLTKDWEEVLEMRKK 302
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 123 PTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKK 236
PT+T+ L L + NL S+ E+ K +EKI + R++
Sbjct: 2424 PTSTIDLNMLQGIEDNLNSLPAEESDKIREKINDLRRR 2461
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 123 PTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKK 236
PT+T+ L L + NL S+ E+ K +EKI + R++
Sbjct: 2482 PTSTIDLNMLQGIEDNLNSLPAEESDKIREKINDLRRR 2519
>AC084158-16|AAK68571.2| 347|Caenorhabditis elegans Hypothetical
protein Y69A2AR.26 protein.
Length = 347
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = -1
Query: 273 ISTVTSRL*WNHASFGIRGSSLVLWESFPGEYFLNSSVQRLDLEVELSQ 127
IS RL + G+ S L+L SFPGE LNS R E+ Q
Sbjct: 225 ISQPLKRLELDEYECGLLKSLLLLSSSFPGEVQLNSQQSRAKCLTEMLQ 273
>Z69787-10|CAH65466.1| 398|Caenorhabditis elegans Hypothetical
protein C44C10.11 protein.
Length = 398
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 150 LSAEQTNLKSILQEKIPKEQEKIREFRKKH 239
L+ E NLK L++K E + I E +KKH
Sbjct: 318 LTEENHNLKEQLKQKTDAETKMIAEMKKKH 347
>U00031-9|AAK18871.1| 470|Caenorhabditis elegans Hypothetical
protein B0361.8 protein.
Length = 470
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 160 SALRPRSRTVAVGHAFCNSTSLEDVILNRAIFKAAERKLP-HK 35
S R +S+TVA H +CN+ + +L AI + ++K P HK
Sbjct: 34 SGFRRKSKTVAFFHPYCNAGGGGERVLWAAI-RTMQKKFPDHK 75
>AF040655-9|AAB95038.1| 288|Caenorhabditis elegans Hypothetical
protein T24E12.3 protein.
Length = 288
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +3
Query: 144 RGLSAEQTNLKSIL--QEKIPKEQEKIREFRKKHGSTKVERS 263
+G + Q L+ L QEK+ ++QEKI+ +++ ++VE S
Sbjct: 226 QGFGSMQETLQKFLNNQEKLNEDQEKIKNDKERDSISQVENS 267
>Z68318-4|CAA92693.2| 1170|Caenorhabditis elegans Hypothetical
protein T21B10.3 protein.
Length = 1170
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -1
Query: 384 CCWHSG-MDRPRKRIPSSASSTEVSQTRPLIPRMPPYIISTVT 259
C W S + P+K++PS T Q ++ P +STV+
Sbjct: 585 CSWFSSSLQNPKKQVPSGVYKTIAEQHLDEFEQIKPEEVSTVS 627
>AF025460-5|AAB70988.5| 584|Caenorhabditis elegans Polh (dna
polymerase eta) homologprotein 1 protein.
Length = 584
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -3
Query: 214 FSCSLGIFSWRILFKFVCSALRPRSRTV 131
F CS G+ + +++ K VC+ +PR +T+
Sbjct: 209 FFCSAGVGNNKMMAKLVCARHKPRQQTL 236
>AB244413-1|BAE72703.1| 584|Caenorhabditis elegans DNA polymerase
eta protein.
Length = 584
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -3
Query: 214 FSCSLGIFSWRILFKFVCSALRPRSRTV 131
F CS G+ + +++ K VC+ +PR +T+
Sbjct: 209 FFCSAGVGNNKMMAKLVCARHKPRQQTL 236
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,905,658
Number of Sequences: 27780
Number of extensions: 294401
Number of successful extensions: 904
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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