Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060485.seq
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 124 1e-29
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 109 5e-25
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 95 1e-20
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 94 1e-20
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 91 1e-19
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 85 9e-18
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 78 1e-15
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 75 1e-14
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 37 0.003
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer... 27 1.9
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 26 4.4
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 26 5.9
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p... 25 7.8
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 25 7.8
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 25 7.8
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.8
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 124 bits (299), Expect = 1e-29
Identities = 70/144 (48%), Positives = 92/144 (63%)
Frame = +2
Query: 254 KVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQK 433
+V +TNDGATILK +SV+HPAAKMLV+LS AQD+EAGDGTTSVV++AG++L AEKLL+K
Sbjct: 54 EVILTNDGATILKHLSVLHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKK 113
Query: 434 GIHPTVISDGFQKALQLALQVVENMQLQWT*IMKMLCSRQLQHH*IPK*FHNTQLFWAPI 613
GIHPTVI++ FQ+A + ++ L + R K API
Sbjct: 114 GIHPTVIAESFQRAAGFTVDCMKENALAIELSDRESLLRAATTSLNSKIVSQYSNLLAPI 173
Query: 614 AVQAIRAVMEPIVSGVGARVDLRD 685
AV A+ V++P V VDL+D
Sbjct: 174 AVDAVLKVIDP---RVATNVDLKD 194
Score = 68.1 bits (159), Expect = 1e-12
Identities = 29/45 (64%), Positives = 39/45 (86%)
Frame = +3
Query: 126 YKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGKL 260
++D+ KP ++RLSNI AA++VADAIRTSLGP+GMDKMIQ G++
Sbjct: 11 FQDREKPQEVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEV 55
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 109 bits (261), Expect = 5e-25
Identities = 51/84 (60%), Positives = 67/84 (79%)
Frame = +2
Query: 242 SSQWKVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEK 421
S ++T+TNDGATIL QM V H AK+LV+LS++QD E GDGTT VVV+AGALL+ AE
Sbjct: 65 SPDGEITVTNDGATILDQMEVEHQIAKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAEA 124
Query: 422 LLQKGIHPTVISDGFQKALQLALQ 493
L+ KGIHP I+DG++KA Q+A++
Sbjct: 125 LIDKGIHPIRIADGYEKACQVAVK 148
Score = 40.7 bits (91), Expect = 2e-04
Identities = 17/33 (51%), Positives = 27/33 (81%)
Frame = +3
Query: 162 SNINAAKAVADAIRTSLGPRGMDKMIQAANGKL 260
S+I A K VA+ +RTSLGPRG+DK++ + +G++
Sbjct: 38 SHILATKTVANIVRTSLGPRGLDKILISPDGEI 70
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 94.7 bits (225), Expect = 1e-20
Identities = 42/86 (48%), Positives = 63/86 (73%)
Frame = +2
Query: 257 VTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKG 436
V +TNDG IL+++ V HPAAK ++EL+R QD E GDGTTSV+++AG +L +A LL +
Sbjct: 55 VLLTNDGHAILREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRK 114
Query: 437 IHPTVISDGFQKALQLALQVVENMQL 514
IHP V+ F++AL+ AL +++ + L
Sbjct: 115 IHPVVMIRSFKQALEDALSIIDEITL 140
Score = 42.7 bits (96), Expect = 5e-05
Identities = 20/28 (71%), Positives = 23/28 (82%)
Frame = +3
Query: 156 RLSNINAAKAVADAIRTSLGPRGMDKMI 239
++SNI AAKAVAD IRT LGPR M KM+
Sbjct: 21 QMSNIQAAKAVADVIRTCLGPRAMLKML 48
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 94.3 bits (224), Expect = 1e-20
Identities = 43/87 (49%), Positives = 63/87 (72%)
Frame = +2
Query: 254 KVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQK 433
+V I+NDGATI+K + ++HPAAK LV+++RAQD E GDGTTSVVV AG LL A ++
Sbjct: 59 EVVISNDGATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVED 118
Query: 434 GIHPTVISDGFQKALQLALQVVENMQL 514
G+ +I G++KA QLA+ ++ + +
Sbjct: 119 GVSSHLIIRGYRKAAQLAVNKIKEIAI 145
Score = 40.7 bits (91), Expect = 2e-04
Identities = 21/43 (48%), Positives = 27/43 (62%)
Frame = +3
Query: 132 DKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGKL 260
D S+ LSNINA AV D IRT+LGP G DK++ G++
Sbjct: 18 DDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEV 60
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 91.5 bits (217), Expect = 1e-19
Identities = 44/84 (52%), Positives = 62/84 (73%)
Frame = +2
Query: 257 VTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKG 436
VT+TNDGATIL + V HPA K+LVEL++ QD E GDGTTSVV+IA LL A +L++
Sbjct: 57 VTVTNDGATILSLLDVEHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNK 116
Query: 437 IHPTVISDGFQKALQLALQVVENM 508
IHPT I G++ A++ A++ + ++
Sbjct: 117 IHPTTIITGYRLAIREAVKFMTDV 140
Score = 37.9 bits (84), Expect = 0.001
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = +3
Query: 132 DKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMI 239
+K D+R N+ A A+A+ +++SLGP G+DKM+
Sbjct: 15 EKISGEDVRNQNVLATTAIANVVKSSLGPVGLDKML 50
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 85.0 bits (201), Expect = 9e-18
Identities = 42/87 (48%), Positives = 59/87 (67%)
Frame = +2
Query: 239 SSSQWKVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAE 418
S+S + +TNDGATILK +++ + AAK+LV +S+ QD E GDGTTSV V A LL AE
Sbjct: 51 SNSSGDIVVTNDGATILKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAE 110
Query: 419 KLLQKGIHPTVISDGFQKALQLALQVV 499
++ IHP VI DG++ A + A+ +
Sbjct: 111 IMVNAKIHPQVIIDGYRIATKTAIDAL 137
Score = 37.1 bits (82), Expect = 0.002
Identities = 15/30 (50%), Positives = 24/30 (80%)
Frame = +3
Query: 156 RLSNINAAKAVADAIRTSLGPRGMDKMIQA 245
RLS+ A AV D ++++LGP+GMDK++Q+
Sbjct: 22 RLSSFVGAIAVGDLVKSTLGPKGMDKILQS 51
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 77.8 bits (183), Expect = 1e-15
Identities = 34/82 (41%), Positives = 56/82 (68%)
Frame = +2
Query: 263 ITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIH 442
+TND ATI++++ VIHPAAK++V+ ++ Q+ E GD VVV G LL AE +++ G+
Sbjct: 64 LTNDAATIIRELEVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLT 123
Query: 443 PTVISDGFQKALQLALQVVENM 508
P I+ G++ AL ++V+E +
Sbjct: 124 PLEIAKGYEMALSHTMEVLEEI 145
Score = 33.1 bits (72), Expect = 0.039
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3
Query: 75 IMAPKAGGDAIKANSSVYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMI 239
+ PKA G + Y+ D + N NA + +++ RTSLGP G +K++
Sbjct: 3 LRVPKASGPQLFREG--YRIMQGVEDAVIRNCNAIRELSEITRTSLGPNGKNKIV 55
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 74.5 bits (175), Expect = 1e-14
Identities = 33/85 (38%), Positives = 54/85 (63%)
Frame = +2
Query: 257 VTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKG 436
+ +T DG +L +M + +P A + + + AQD GDGTTSV ++ G LL AE +++G
Sbjct: 52 IKLTKDGKVLLTEMQIQNPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIREG 111
Query: 437 IHPTVISDGFQKALQLALQVVENMQ 511
+HP++ISDGF A AL +++ +
Sbjct: 112 LHPSLISDGFNLAKNEALTFLDSFK 136
Score = 29.1 bits (62), Expect = 0.63
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 165 NINAAKAVADAIRTSLGPRGMDKMIQAANGKLQ 263
NI+AA + D ++++LGP G KM+ G ++
Sbjct: 21 NISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIK 53
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Frame = +2
Query: 263 ITNDGATILKQMSVIHP----AAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQ 430
IT DG T+ + +S+ A+++ +++ + AGDGTT+ V+ A+ + +
Sbjct: 80 ITKDGVTVARSVSLKDKFENLGARLVQDVASKTNEVAGDGTTTATVLTRAIFSETVRNVA 139
Query: 431 KGIHPTVISDGFQKALQLALQVVE 502
G +P + G Q A+ ++ ++
Sbjct: 140 AGCNPMDLRRGIQLAVDNVVEFLQ 163
>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
Mam4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 298 ECYSSSCKNVGRIISCSRY*SW*WNNISSCYCWCVVGF 411
EC S K+ ++I+C R+ S+ N I S Y +GF
Sbjct: 87 ECLLSGGKSFAKVINCLRFPSFLINFIFSVYQTSALGF 124
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 26.2 bits (55), Expect = 4.4
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Frame = +2
Query: 263 ITNDGATILKQMSVIHPAAK-MLVELSRAQDI-EAGDGTTSVVVIAGALLDSAEKLLQKG 436
+T++ + K ++ + P + + S +Q D + A A+ + + LQ+
Sbjct: 345 VTSEIMNVFKDIANVSPLFREQIANFSISQTSGNVFDEPAKLADFAAAVSAADHRELQEV 404
Query: 437 IHPTVISDGFQKALQLALQVVENMQLQ 517
+ T I D QKAL + + + N QLQ
Sbjct: 405 LEATNIGDRLQKALYVLKKELLNAQLQ 431
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +3
Query: 555 CNITKFQSSFTTLNYF 602
CNI KF SSF T N F
Sbjct: 276 CNIPKFNSSFKTSNDF 291
>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 612
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +2
Query: 203 HKLRASWNG*DDSSSQWKVTITNDGATILKQMSVI 307
H+L SW+G ++ W+ N+G T+ + ++
Sbjct: 294 HELAHSWSGNLVTNESWQCFWLNEGMTVFLERKIL 328
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Frame = -2
Query: 658 TTNNRFHYCSNC--LHCNGC 605
T NR H+C NC + CN C
Sbjct: 184 TFTNRKHHCRNCGGVFCNQC 203
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 246 LLESSYPFHEALSLCGWHQQQLLR 175
LLES+ FH G+HQ+QL R
Sbjct: 254 LLESTDEFHYEQGNLGFHQRQLAR 277
>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 418 LSRIQQRTSNNNY*CCSITSFNI 350
LS Q TS NN+ C SI +F I
Sbjct: 177 LSNRQLNTSENNWTCLSIENFGI 199
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,680,360
Number of Sequences: 5004
Number of extensions: 52223
Number of successful extensions: 148
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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