Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060485.seq
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                 103   1e-22
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                   89   2e-18
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)              82   4e-16
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)              78   8e-15
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   4e-12
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               66   2e-11
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)                      56   2e-08
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)              49   3e-06
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)            38   0.010
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)                36   0.023
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)                  31   0.87 
SB_51311| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_14691| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_56096| Best HMM Match : fn3 (HMM E-Value=1.3e-24)                   29   4.7  
SB_20457| Best HMM Match : fn3 (HMM E-Value=5.1e-12)                   28   8.1  

>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score =  103 bits (248), Expect = 1e-22
 Identities = 50/89 (56%), Positives = 69/89 (77%)
 Frame = +2

Query: 242 SSQWKVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEK 421
           S   +VT+TNDGATIL  M V H  AK++VELS++QD E GDGTT VVV+AGALL+ AE+
Sbjct: 61  SPDGEVTVTNDGATILGMMEVDHQIAKLMVELSKSQDNEIGDGTTGVVVLAGALLEHAEQ 120

Query: 422 LLQKGIHPTVISDGFQKALQLALQVVENM 508
           LL  GIHP  I+DG++ A ++AL+ ++++
Sbjct: 121 LLDWGIHPIRIADGYELAAKIALEHMDSI 149



 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 18/33 (54%), Positives = 28/33 (84%)
 Frame = +3

Query: 162 SNINAAKAVADAIRTSLGPRGMDKMIQAANGKL 260
           S+I AA+AVA  ++TSLGP+GMDKM+ + +G++
Sbjct: 34  SHILAARAVASILKTSLGPKGMDKMMVSPDGEV 66



 Score = 31.1 bits (67), Expect = 0.87
 Identities = 12/25 (48%), Positives = 21/25 (84%)
 Frame = +1

Query: 514 PVDLNNEDALLKAAATSLNSKVVSQ 588
           PVD +N+++L++ A T+L SK+VS+
Sbjct: 154 PVDKDNKESLIQTAMTTLGSKIVSR 178


>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 43/82 (52%), Positives = 59/82 (71%)
 Frame = +2

Query: 257 VTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKG 436
           + +TNDGATILK + + +PAAK+LVELS+ QD E GDGTTSV V+   LL  AEKL+   
Sbjct: 58  IQVTNDGATILKSIGIDNPAAKILVELSKVQDDEVGDGTTSVTVLTSELLKEAEKLVSCK 117

Query: 437 IHPTVISDGFQKALQLALQVVE 502
           IHP  I  G++K+++ A + +E
Sbjct: 118 IHPQTIVAGWRKSVKAAEKALE 139



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 17/46 (36%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
 Frame = +3

Query: 132 DKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQA--ANGKLQ 263
           ++ +    RLS+   A A+ D ++++LGP+GMDK++Q+   NG +Q
Sbjct: 14  EEERAETARLSSFVGAIAIGDLVKSTLGPKGMDKILQSFGQNGNIQ 59


>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 82.2 bits (194), Expect = 4e-16
 Identities = 40/104 (38%), Positives = 64/104 (61%), Gaps = 3/104 (2%)
 Frame = +2

Query: 263 ITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIH 442
           +TNDG  IL+++ V HPAAK ++E+SR QD E GDGTTSV+++AG  +  AE  L++ +H
Sbjct: 1   MTNDGNAILREIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMH 60

Query: 443 PTVISDGFQKALQLALQVVENM---QLQWT*IMKMLCSRQLQHH 565
           PT I   ++ A+   + +++     +LQ+       C R  + H
Sbjct: 61  PTQIIAAYRLAMDDMIDILKQQIREELQYRSRTYGHCLRNFREH 104


>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
          Length = 186

 Score = 77.8 bits (183), Expect = 8e-15
 Identities = 35/57 (61%), Positives = 45/57 (78%)
 Frame = +3

Query: 84  PKAGGDAIKANSSVYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANG 254
           P+A     +++ + +KDK KP +IR++NI AAKAVADAIRTSLGP+GMDKMIQ  NG
Sbjct: 2   PEAKAGRNQSHKTAFKDKEKPQEIRMTNITAAKAVADAIRTSLGPKGMDKMIQGGNG 58


>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 68.9 bits (161), Expect = 4e-12
 Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 3/94 (3%)
 Frame = +2

Query: 293 QMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQK 472
           ++ V HPAAK ++E+SR QD E GDGTTSV+++AG  +  AE  L++ +HPT I   ++ 
Sbjct: 208 KIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRL 267

Query: 473 ALQLALQVVENM---QLQWT*IMKMLCSRQLQHH 565
           A+   + +++     +LQ+       C R  + H
Sbjct: 268 AMDDMIDILKQQIREELQYRSRTYGHCLRNFREH 301


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 30/85 (35%), Positives = 54/85 (63%)
 Frame = +2

Query: 260 TITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGI 439
           T+   G   ++   + HP A ++  ++ AQD   GDGTTS V+I G LL  A+  + +G+
Sbjct: 157 TMNPFGQNGVQNSQIQHPTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGL 216

Query: 440 HPTVISDGFQKALQLALQVVENMQL 514
           HP ++++GF+ A + AL+V+E +++
Sbjct: 217 HPRLVTEGFEVAKKKALEVLEEVKV 241


>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
          Length = 144

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 28/56 (50%), Positives = 38/56 (67%)
 Frame = +2

Query: 335 LSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLALQVVE 502
           LS+ QD E GDGTTSV V+A  LL  AEKL+   IHP  I  G++K+++ A + +E
Sbjct: 2   LSKVQDDEVGDGTTSVTVLASELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALE 57


>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
          Length = 724

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 19/35 (54%), Positives = 29/35 (82%)
 Frame = +2

Query: 254 KVTITNDGATILKQMSVIHPAAKMLVELSRAQDIE 358
           K TI+NDGATI+  + ++HPAAK LV+++++QD E
Sbjct: 690 KATISNDGATIINLLDIVHPAAKTLVDIAKSQDAE 724



 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 22/42 (52%), Positives = 30/42 (71%)
 Frame = +3

Query: 132 DKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGK 257
           D S+     +SNI+A + +ADA+RT+LGPRGMDK+I    GK
Sbjct: 649 DASQGIPQLISNIDACQFIADAVRTTLGPRGMDKLIVDGRGK 690


>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
          Length = 563

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 16/50 (32%), Positives = 30/50 (60%)
 Frame = +2

Query: 242 SSQWKVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVI 391
           SS   + ITN G+ IL+ +++ +P  +M+VE +R+     G G +  ++I
Sbjct: 31  SSSGNILITNSGSMILESLTMGNPTERMIVEAARSLSGRTGSGASYFIII 80


>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
          Length = 278

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
 Frame = +2

Query: 263 ITNDGATILKQMSVIHP----AAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQ 430
           IT DG T+ K + +        A+++ +++   + EAGDGTT+  V+A ++       + 
Sbjct: 105 ITKDGVTVAKAIELKDKYQNIGARLVQDVANNTNEEAGDGTTTATVLARSIATEGFLHVS 164

Query: 431 KGIHPTVIS 457
           KG +P  +S
Sbjct: 165 KGANPQEVS 173


>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
          Length = 559

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 22/65 (33%), Positives = 33/65 (50%)
 Frame = +2

Query: 314 AAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLALQ 493
           A++ML E+SR      GD +     ++G  L   EKLL+  +HP  I  G  K L   +Q
Sbjct: 238 ASQMLYEVSRL----LGDKSIVASFVSGVDLSRQEKLLKDSLHPPRIVIGTPKRLWEIVQ 293

Query: 494 VVENM 508
             E++
Sbjct: 294 EHEHL 298


>SB_51311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 276 PSLVIVTFHWLLESSYPFHEALS 208
           PSLVI+TFH+   S+  FH A +
Sbjct: 99  PSLVIITFHYAFTSNRTFHYAFT 121


>SB_14691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 542 CSRQLQHH*IPK*FHNTQLFWAPIAVQAIRAVMEPIVSGV 661
           CS  L     P  +H+  L ++P A   +RA  EP+ SG+
Sbjct: 224 CSHSLMFRDAPLYYHSYGLGYSPYAYAPLRASQEPVESGL 263


>SB_56096| Best HMM Match : fn3 (HMM E-Value=1.3e-24)
          Length = 1065

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 22/76 (28%), Positives = 33/76 (43%)
 Frame = +2

Query: 206  KLRASWNG*DDSSSQWKVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVV 385
            +LR+ W G +  + QW          ++K  SV+ P  + L     +  IE     T   
Sbjct: 923  RLRSLWTGNERIAVQWDSVEDEVDRYVVKWSSVLSPQEETLPATKTSMVIEECIAGTR-H 981

Query: 386  VIAGALLDSAEKLLQK 433
             IA A +DS  KL+ K
Sbjct: 982  FIAVAAIDSHRKLIAK 997


>SB_20457| Best HMM Match : fn3 (HMM E-Value=5.1e-12)
          Length = 1114

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 3/116 (2%)
 Frame = +2

Query: 215  ASWNG*DDSS--SQWKVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVV 388
            ASW+  D S   S+W + I        + ++ +      L  ++R +DI  GD   +VV 
Sbjct: 722  ASWDTPDLSECISEWALNIKEQALDPSEAVTSVASKVANLTSVTRVEDIYPGD-LYAVVD 780

Query: 389  IAGALLDSAEKLLQKGIHPTVISDGFQKALQLALQVVENMQL-QWT*IMKMLCSRQ 553
            I G L + A     +   P   +D  +  +Q A  ++E   + +W+ I      RQ
Sbjct: 781  ILGLLSERAGS--SRSSVPQASTDFNKAVVQTASNILEAKTINKWSFIPPTKRKRQ 834


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,686,637
Number of Sequences: 59808
Number of extensions: 389328
Number of successful extensions: 1001
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)