Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060485.seq
(686 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 114 4e-26
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 103 1e-22
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 96 2e-20
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 94 9e-20
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 93 1e-19
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 84 7e-17
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 84 1e-16
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 80 2e-15
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 79 4e-15
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 76 2e-14
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 47 1e-05
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 47 1e-05
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 46 3e-05
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 46 3e-05
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 45 5e-05
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 41 7e-04
At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit, pu... 40 0.002
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 36 0.025
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 36 0.025
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 35 0.044
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 33 0.18
At2g43040.1 68415.m05341 calmodulin-binding protein similar to p... 29 2.2
At5g03150.1 68418.m00263 zinc finger (C2H2 type) family protein ... 29 2.9
At2g04530.1 68415.m00459 RNase Z 97% identical to RNase Z (GI:20... 29 2.9
At1g13320.1 68414.m01546 serine/threonine protein phosphatase 2A... 29 3.8
At4g21120.1 68417.m03054 amino acid permease family protein simi... 28 6.7
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 114 bits (275), Expect = 4e-26
Identities = 68/149 (45%), Positives = 89/149 (59%)
Frame = +2
Query: 239 SSSQWKVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAE 418
S++ +V ITNDGATIL +M V+ PAAKMLVELS++QD AGDGTT+VVVIAGALL +
Sbjct: 58 STANGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDSAAGDGTTTVVVIAGALLKECQ 117
Query: 419 KLLQKGIHPTVISDGFQKALQLALQVVENMQLQWT*IMKMLCSRQLQHH*IPK*FHNTQL 598
LL GIHPTVISD KA A+ ++ M + + + K
Sbjct: 118 SLLTNGIHPTVISDSLHKACGKAIDILTAMAVPVELTDRDSLVKSASTSLNSKVVSQYST 177
Query: 599 FWAPIAVQAIRAVMEPIVSGVGARVDLRD 685
AP+AV A+ +V++P + VDLRD
Sbjct: 178 LLAPLAVDAVLSVIDPEKPEI---VDLRD 203
Score = 65.7 bits (153), Expect = 3e-11
Identities = 35/61 (57%), Positives = 44/61 (72%)
Frame = +3
Query: 78 MAPKAGGDAIKANSSVYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGK 257
MA K G KA S V D + DIR +NIN+A+AV+DA+RTSLGP+GMDKMI ANG+
Sbjct: 8 MASKPRGS--KAESFV--DNKRREDIRFANINSARAVSDAVRTSLGPKGMDKMISTANGE 63
Query: 258 L 260
+
Sbjct: 64 V 64
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 103 bits (246), Expect = 1e-22
Identities = 48/84 (57%), Positives = 68/84 (80%)
Frame = +2
Query: 257 VTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKG 436
+TITNDGATIL+QM V + AK++VELSR+QD E GDGTT VVV+AGALL+ AE+ L +G
Sbjct: 64 ITITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRG 123
Query: 437 IHPTVISDGFQKALQLALQVVENM 508
IHP I++G++ A ++A++ +E +
Sbjct: 124 IHPIRIAEGYEMASRVAVEHLERI 147
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/44 (47%), Positives = 31/44 (70%)
Frame = +3
Query: 129 KDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGKL 260
K + + D + +NI A KAVA +R+SLGP+GMDKM+Q +G +
Sbjct: 21 KTRLRGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGPDGDI 64
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 96.3 bits (229), Expect = 2e-20
Identities = 43/86 (50%), Positives = 62/86 (72%)
Frame = +2
Query: 257 VTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKG 436
+ +TNDG IL+++ V HPAAK ++ELSR QD E GDGTTSV+V+AG +L AE L+K
Sbjct: 55 IVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFLEKN 114
Query: 437 IHPTVISDGFQKALQLALQVVENMQL 514
HPTVI + KAL+ ++ V++ + +
Sbjct: 115 YHPTVICRAYIKALEDSIAVLDKIAM 140
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/30 (66%), Positives = 23/30 (76%)
Frame = +3
Query: 165 NINAAKAVADAIRTSLGPRGMDKMIQAANG 254
NI A+KAVAD IRT+LGPR M KM+ A G
Sbjct: 24 NIQASKAVADIIRTTLGPRSMLKMLLDAGG 53
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 93.9 bits (223), Expect = 9e-20
Identities = 45/82 (54%), Positives = 60/82 (73%)
Frame = +2
Query: 257 VTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKG 436
VTITNDGATIL+ + V HPAAK+LVEL+ QD E GDGTTSVV++A LL A L++
Sbjct: 55 VTITNDGATILRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNK 114
Query: 437 IHPTVISDGFQKALQLALQVVE 502
IHPT I G++ A++ + + +E
Sbjct: 115 IHPTSIISGYRLAMRESCKYIE 136
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/42 (40%), Positives = 28/42 (66%)
Frame = +3
Query: 114 NSSVYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMI 239
N + D+ D+R N+ A +AV++ ++TSLGP G+DKM+
Sbjct: 7 NPDISGDRQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKML 48
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 93.5 bits (222), Expect = 1e-19
Identities = 45/77 (58%), Positives = 58/77 (75%)
Frame = +2
Query: 257 VTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKG 436
VT+TNDGATILK + + +PAAK+LV++S+ QD E GDGTTSVVV+AG LL AEKL+
Sbjct: 56 VTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASK 115
Query: 437 IHPTVISDGFQKALQLA 487
IHP I G++ A + A
Sbjct: 116 IHPMTIIAGYRMASECA 132
Score = 36.7 bits (81), Expect = 0.014
Identities = 15/44 (34%), Positives = 31/44 (70%), Gaps = 3/44 (6%)
Frame = +3
Query: 123 VYKD---KSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQA 245
++KD + K R+++ A A++D ++++LGP+GMDK++Q+
Sbjct: 6 IFKDDASEEKGERARMASFVGAMAISDLVKSTLGPKGMDKILQS 49
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 84.2 bits (199), Expect = 7e-17
Identities = 39/92 (42%), Positives = 63/92 (68%)
Frame = +2
Query: 233 DDSSSQWKVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDS 412
DD S VTI+NDGATI+K + ++HPAAK+LV+++++QD E GDGTT+VV++A L
Sbjct: 54 DDKGS---VTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKE 110
Query: 413 AEKLLQKGIHPTVISDGFQKALQLALQVVENM 508
A+ ++ G+H + ++ A LA+ V+ +
Sbjct: 111 AKPFIEDGVHAQNLIRSYRTASTLAIAKVKEL 142
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/34 (58%), Positives = 25/34 (73%)
Frame = +3
Query: 159 LSNINAAKAVADAIRTSLGPRGMDKMIQAANGKL 260
+SNINA AV D +RT+LGPRGMDK+I G +
Sbjct: 26 VSNINACTAVGDVVRTTLGPRGMDKLIHDDKGSV 59
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 83.8 bits (198), Expect = 1e-16
Identities = 36/85 (42%), Positives = 59/85 (69%)
Frame = +2
Query: 254 KVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQK 433
K+ +TND ATI+ ++ + HPAAK+LV ++AQ E GDG + AG LL +AE+L++
Sbjct: 62 KLFVTNDAATIVNELEIQHPAAKLLVLAAKAQQEEIGDGANLTISFAGELLQNAEELIRM 121
Query: 434 GIHPTVISDGFQKALQLALQVVENM 508
G+HP+ I G+ KA+ A++++E +
Sbjct: 122 GLHPSEIISGYTKAVSKAVEILEQL 146
Score = 35.1 bits (77), Expect = 0.044
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 126 YKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMI 239
Y+ S + + NI A K ++ RTSLGP GM+KM+
Sbjct: 19 YRHLSGLDEAVIKNIEACKELSTITRTSLGPNGMNKMV 56
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 79.8 bits (188), Expect = 2e-15
Identities = 37/71 (52%), Positives = 55/71 (77%)
Frame = +2
Query: 296 MSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKA 475
M V + AK++VELSR+QD E GDGTT VVV+AGALL+ AE+ L +GIHP I++G++ A
Sbjct: 1 MDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMA 60
Query: 476 LQLALQVVENM 508
++A++ +E +
Sbjct: 61 SRVAVEHLERI 71
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 78.6 bits (185), Expect = 4e-15
Identities = 34/85 (40%), Positives = 56/85 (65%)
Frame = +2
Query: 257 VTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKG 436
+ +T DG T+LK+M + +P A M+ + AQD +GDGTTS V+ G L+ +E+ + +G
Sbjct: 53 IKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEG 112
Query: 437 IHPTVISDGFQKALQLALQVVENMQ 511
+HP V+ DGF+ A + LQ ++N +
Sbjct: 113 MHPRVLVDGFEIAKRATLQFLDNFK 137
Score = 34.3 bits (75), Expect = 0.077
Identities = 13/32 (40%), Positives = 23/32 (71%)
Frame = +3
Query: 168 INAAKAVADAIRTSLGPRGMDKMIQAANGKLQ 263
INAAK + D ++++LGP+G KM+ +G ++
Sbjct: 23 INAAKGLQDVLKSNLGPKGTIKMLVGGSGDIK 54
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 76.2 bits (179), Expect = 2e-14
Identities = 33/85 (38%), Positives = 55/85 (64%)
Frame = +2
Query: 257 VTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKG 436
+ +T DG T+LK+M + +P A M+ + AQD +GDGTTS V+ G L+ +E+ + +G
Sbjct: 53 IKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEG 112
Query: 437 IHPTVISDGFQKALQLALQVVENMQ 511
+HP V+ DGF+ A + LQ ++ +
Sbjct: 113 MHPRVLVDGFEIAKRATLQFLDTFK 137
Score = 34.3 bits (75), Expect = 0.077
Identities = 13/32 (40%), Positives = 23/32 (71%)
Frame = +3
Query: 168 INAAKAVADAIRTSLGPRGMDKMIQAANGKLQ 263
INAAK + D ++++LGP+G KM+ +G ++
Sbjct: 23 INAAKGLQDVLKSNLGPKGTIKMLVGGSGDIK 54
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Frame = +2
Query: 263 ITNDGATILKQMSVIHPA----AKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQ 430
I NDG T+ +++ + P AK++ + + + AGDGTT+ VV+A L+ K++
Sbjct: 100 IVNDGVTVAREVELEDPVENIGAKLVRQAASKTNDLAGDGTTTSVVLAQGLIAEGVKVVA 159
Query: 431 KGIHPTVISDGFQKALQLALQVVENM 508
G +P +I+ G +K + + ++ M
Sbjct: 160 AGANPVLITRGIEKTTKALVAELKKM 185
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Frame = +2
Query: 263 ITNDGATILKQMSVIHPAAKMLVELSRAQDIE----AGDGTTSVVVIAGALLDSAEKLLQ 430
I NDG T+LK++ + P + V+L R + AGDG+T+ +++A L+ K++
Sbjct: 88 IVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSIILAHGLITEGIKVIS 147
Query: 431 KGIHPTVISDGFQKALQLALQVVENM 508
G +P ++ G +K + + +++M
Sbjct: 148 AGTNPIQVARGIEKTTKALVLELKSM 173
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Frame = +2
Query: 263 ITNDGATILKQMSVIHPA----AKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQ 430
I NDG T+ +++ + P AK++ + + + AGDGTT+ VV+A + K++
Sbjct: 104 IVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVA 163
Query: 431 KGIHPTVISDGFQKALQLALQVVENM 508
G +P +I+ G +K + + ++ M
Sbjct: 164 AGANPVLITRGIEKTAKALVTELKKM 189
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Frame = +2
Query: 263 ITNDGATILKQMSVIHPA----AKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQ 430
I NDG T+ +++ + P AK++ + + + AGDGTT+ VV+A + K++
Sbjct: 104 IVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVA 163
Query: 431 KGIHPTVISDGFQKALQLALQVVENM 508
G +P +I+ G +K + + ++ M
Sbjct: 164 AGANPVLITRGIEKTAKALVTELKKM 189
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 44.8 bits (101), Expect = 5e-05
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Frame = +2
Query: 263 ITNDGATILKQMSVIHPA----AKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQ 430
I NDG T+ +++ + P AK++ + + + AGDGTT+ VV+A + K++
Sbjct: 100 IVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVA 159
Query: 431 KGIHPTVISDGFQKALQLALQVVENM 508
G +P +I+ G +K + + ++ M
Sbjct: 160 AGANPVLITRGIEKTAKALVNELKLM 185
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 41.1 bits (92), Expect = 7e-04
Identities = 19/86 (22%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Frame = +2
Query: 257 VTITNDGATILKQM----SVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKL 424
+ + NDG TI K + ++ + A ++ E++ + AGDGTT+ +++A ++ +
Sbjct: 78 IKVINDGVTIAKSIELPDTIENAGATLIQEVAIKMNESAGDGTTTAIILAREMIKAGSLA 137
Query: 425 LQKGIHPTVISDGFQKALQLALQVVE 502
+ G + + +G K ++ ++V++
Sbjct: 138 IAFGANAVSVKNGMNKTVKELVRVLQ 163
>At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative similar to chaperonin containing TCP-1 (CCT)
epsilon subunit [Tetrahymena pyriformis] GI:15824416,
SP|P80316 T-complex protein 1, epsilon subunit
(TCP-1-epsilon) (CCT-epsilon) {Mus musculus}
Length = 142
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = +3
Query: 129 KDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDK 233
K + K D + +NI+A KAVA +R+SLGP+GM+K
Sbjct: 21 KTRLKGIDAQKANISAGKAVARILRSSLGPKGMEK 55
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 35.9 bits (79), Expect = 0.025
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Frame = +2
Query: 263 ITNDGATILKQMSVIHPA----AKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQ 430
IT DG T+ K +S A A+++ +++ A + AGDGTT V+ A+L K +
Sbjct: 79 ITKDGVTVAKSISFQAKAKNIGAELVKQVASATNKVAGDGTTCATVLTQAILIEGCKSVA 138
Query: 431 KGIHPTVISDGFQKAL 478
G++ + G A+
Sbjct: 139 AGVNVMDLRVGINMAI 154
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 35.9 bits (79), Expect = 0.025
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Frame = +2
Query: 263 ITNDGATILKQM----SVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQ 430
+ NDG TI + + ++ + A ++ E++ + AGDGTT+ ++A ++ +
Sbjct: 93 VVNDGVTIARAIELPNAMENAGAALIREVASKTNDSAGDGTTTASILAREIIKHGLLSVT 152
Query: 431 KGIHPTVISDGFQKALQ 481
G +P + G K +Q
Sbjct: 153 SGANPVSLKRGIDKTVQ 169
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 35.1 bits (77), Expect = 0.044
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Frame = +2
Query: 263 ITNDGATILKQMS----VIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQ 430
+T DG T+ K + + + A ++ +++ A + AGDGTT V+ A+ K +
Sbjct: 80 VTKDGVTVAKSIEFKDRIKNVGASLVKQVANATNDVAGDGTTCATVLTRAIFTEGCKSVA 139
Query: 431 KGIHPTVISDGFQKALQLALQVVENMQ 511
G++ + G + A+ VV N+Q
Sbjct: 140 AGMNAMDLRRGIKLAVD---TVVTNLQ 163
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 33.1 bits (72), Expect = 0.18
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Frame = +2
Query: 263 ITNDGATILKQMS----VIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQ 430
+T DG T+ K + + + A ++ +++ A + AGDGTT V+ A+ K +
Sbjct: 79 VTKDGVTVAKSIEFKDKIKNVGASLVKQVANATNDVAGDGTTCATVLTRAIFAEGCKSVA 138
Query: 431 KGIHPTVISDGFQKAL 478
G++ + G A+
Sbjct: 139 AGMNAMDLRRGISMAV 154
>At2g43040.1 68415.m05341 calmodulin-binding protein similar to
pollen-specific calmodulin-binding protein MPCBP
GI:10086260 from [Zea mays]; contains Pfam profile
PF00515: TPR Domain
Length = 704
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +2
Query: 293 QMSVIHPAAKMLVELS--RAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGF 466
Q SV AA +++E +A+ ++ T ++LDS EK+ Q+GI + +
Sbjct: 113 QQSVSQHAANLVLEAIYLKAKSLQKLGRITEAAHECKSVLDSVEKIFQQGIPDAQVDNKL 172
Query: 467 QKALQLALQVV 499
Q+ + A++++
Sbjct: 173 QETVSHAVELL 183
>At5g03150.1 68418.m00263 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 503
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +1
Query: 463 FPKSPSI--GFTGGRKYATPVDLNNEDALLKAAATSLNSKVVSQHSTILGTHCSASNSSS 636
FP S S F+G ++ P+ N L +++TS + QH T+ + S SSS
Sbjct: 298 FPSSSSSLPDFSGHHQFQIPMTSTNPSLTLSSSSTSQQTSASLQHQTLKDSSFSPLFSSS 357
Query: 637 N 639
+
Sbjct: 358 S 358
>At2g04530.1 68415.m00459 RNase Z 97% identical to RNase Z
(GI:20975607) [Arabidopsis thaliana]; similar to RNase Z
(GI:20975609) [Arabidopsis thaliana]; identical to cDNA
RNase Z (At2g04530) GI:20975606
Length = 354
Score = 29.1 bits (62), Expect = 2.9
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = +1
Query: 472 SPSIGFTGGRKYATPVDLNNEDAL----LKAAATSLNSKVVSQHSTILG-THCS 618
SP I FTG +D N DAL L AT L+ ++H+ LG TH S
Sbjct: 246 SPEIAFTGDTTSEYMLDPRNADALRAKVLITEATFLDESFSTEHAQALGHTHIS 299
>At1g13320.1 68414.m01546 serine/threonine protein phosphatase 2A
(PP2A) 65 kDa regulatory subunit, putative similar to
protein phosphatase 2A 65 kDa regulatory subunit
GI:683502 from [Arabidopsis thaliana]
Length = 587
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -3
Query: 396 PAITTTDVVPSPASIS*ARDNSTNIFAAG*ITLICFKIVAPSLVI 262
P T TD+VP+ A + + I AAG +T C +I+ P L I
Sbjct: 274 PEPTRTDLVPAYARLLCDNEAEVRIAAAGKVTKFC-RILNPELAI 317
>At4g21120.1 68417.m03054 amino acid permease family protein similar
to cationic amino acid transporter-1 [Rattus norvegicus]
GI:1589917; contains Pfam profile PF00324: Amino acid
permease
Length = 594
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = -3
Query: 342 RDNSTNIFAAG*ITLICFKIVAPSLVIVTFHWLLESSYPFHEALSLCGW 196
RD + + +T +C+ ++A +L ++ + ++ PF A S GW
Sbjct: 296 RDIPIGLVGSMVVTTVCYCLMAVTLCLMQPYQQIDPDAPFSVAFSAVGW 344
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,907,498
Number of Sequences: 28952
Number of extensions: 271093
Number of successful extensions: 742
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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