Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060484.seq
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 42 7e-05
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce... 39 4e-04
SPAC11E3.09 |pyp3||protein-tyrosine phosphatase Pyp3|Schizosacch... 39 5e-04
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 31 0.14
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 30 0.18
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 28 0.73
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 6.8
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom... 25 9.0
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 41.5 bits (93), Expect = 7e-05
Identities = 23/46 (50%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 268 YICTQGPLPXTFGDFXRMVW-EQGT-VVIXMTTRVMERGRVKCGQY 399
YI Q P P T DF MVW GT VI M T + E G KC QY
Sbjct: 499 YIACQAPKPGTLLDFWEMVWHNSGTNGVIVMLTNLYEAGSEKCSQY 544
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/41 (43%), Positives = 28/41 (68%)
Frame = +2
Query: 140 KNRYTDVLCYDHSRVLLSQTDPDDPTTDYINANYVDGYNRR 262
KNRYTD++ YD +RV L+ +DYINA+++D N++
Sbjct: 461 KNRYTDIVPYDKTRVRLA---VPKGCSDYINASHIDVGNKK 498
>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 39.1 bits (87), Expect = 4e-04
Identities = 17/39 (43%), Positives = 28/39 (71%)
Frame = +2
Query: 128 SNLSKNRYTDVLCYDHSRVLLSQTDPDDPTTDYINANYV 244
++ KNRYTD++ Y+ +RV L +T P + DYINA+++
Sbjct: 294 TSYKKNRYTDIVPYNCTRVHLKRTSPSE--LDYINASFI 330
Score = 33.9 bits (74), Expect = 0.015
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Frame = +1
Query: 268 YICTQGPLPXTFGDFXRMVWE--QGTVVIXMTTRVMERGRVKCGQY-XXXXXXXRQQHGP 438
YI QG + + DF MVW+ + I M + E GR C Y +Q +G
Sbjct: 337 YIACQGSISRSISDFWHMVWDNVENIGTIVMLGSLFEAGREMCTAYWPSNGIGDKQVYGD 396
Query: 439 YAV 447
Y V
Sbjct: 397 YCV 399
>SPAC11E3.09 |pyp3||protein-tyrosine phosphatase
Pyp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 303
Score = 38.7 bits (86), Expect = 5e-04
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +1
Query: 268 YICTQGPLPXTFGDFXRMVWEQ--GTVVIXMTTRVMERGRVKCGQYXXXXXXXRQQHGPY 441
+I TQGP + F +MVW+ + +I M T++ ER R+KC Y G
Sbjct: 92 FIATQGPTSNSIDVFWKMVWQSVPKSGIIVMLTKLRERHRLKCDIYWPVELFETLNIGDL 151
Query: 442 AVLAEDVIQHDDYTISSL 495
+V+ V YT++SL
Sbjct: 152 SVILVKV-----YTLTSL 164
>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 30.7 bits (66), Expect = 0.14
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 236 NYVDGYNRRTPTFVHRVLYRRRSVTFXAW 322
N++DG+N+RT T HRV ++ T W
Sbjct: 80 NFMDGFNKRTDTLQHRVDDKKILKTIEKW 108
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 30.3 bits (65), Expect = 0.18
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +2
Query: 104 TFHNAKLPSNLSKNRYTDVLCYDHSRVLLSQTDPDDPTTDYINANYVDGYNRRTPT 271
T + ++ PS L ++ TD + HS VLL+ T +I N Y RR T
Sbjct: 279 TSNASRQPSPLVSSKSTDNIIRSHSPVLLTPQTLSTSETKHIRPNNSTPYQRRAET 334
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 28.3 bits (60), Expect = 0.73
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 98 VGTFHNAKLPSNLSKNRYTDVLCYDHSRVLLSQTDPDDPTTDYI 229
VG ++N SN S+ R +V CY ++ D DDP ++I
Sbjct: 47 VGFYYNPISESN-SEERLDNVTCYMCTKSFYDWEDDDDPLKEHI 89
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 170 DHSRVLLSQTDPDDPTTDYINANYVDGYNRRTPTFVHRVLYRRRSVT 310
D + +L T P+T+ IN ++ G+N R PT V +R+ T
Sbjct: 127 DSTSILSFNTIRLIPSTNVINTSHYKGFN-RYPTISSTVKVGKRAAT 172
>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 95 PVGTFHNAKLPSNLSKNRY 151
P+ T N +LPSN + NR+
Sbjct: 121 PISTSFNPQLPSNSNTNRF 139
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,204,497
Number of Sequences: 5004
Number of extensions: 16317
Number of successful extensions: 49
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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