Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060484.seq
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0514 - 3985204-3985266,3985920-3986061,3986144-3986276,398...    46   1e-05
12_01_0482 - 3791630-3791698,3791983-3792124,3792202-3792344,379...    38   0.006
02_04_0503 + 23526699-23527112                                         29   2.3  
02_03_0155 + 15805683-15805743,15805824-15806105,15808293-158089...    29   3.0  
07_03_0664 + 20462600-20463005,20464270-20464343                       28   4.0  
01_05_0792 - 25275013-25275551,25275715-25275907                       28   5.2  
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677...    27   6.9  

>11_01_0514 -
           3985204-3985266,3985920-3986061,3986144-3986276,
           3986703-3986817,3987496-3987549,3987787-3987912,
           3989179-3989319,3989470-3989552,3989643-3989733,
           3990318-3990405,3992705-3992832
          Length = 387

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 22/58 (37%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
 Frame = +2

Query: 77  EIRSRPPVGTFHNAKLPSNLSKNRYTDVLCYDHSRVLLSQTDPDDPTT-DYINANYVD 247
           +I++    G F  A+ P+N  KNRY+DV+ +D +RV L  +  D P++ +YINA+ ++
Sbjct: 73  DIQTAFQTGKFTAAQNPANREKNRYSDVMPFDETRVRLKPSASDHPSSNEYINASLIE 130



 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 23/60 (38%), Positives = 32/60 (53%)
 Frame = +1

Query: 268 YICTQGPLPXTFGDFXRMVWEQGTVVIXMTTRVMERGRVKCGQYXXXXXXXRQQHGPYAV 447
           +I TQGPL  TFGDF +MV+E    VI M T+       KC +Y        + +G ++V
Sbjct: 141 FISTQGPLVKTFGDFWQMVYENQCPVIVMVTKF---DGAKCDRYLPTNEGEERDYGKFSV 197


>12_01_0482 -
           3791630-3791698,3791983-3792124,3792202-3792344,
           3792833-3792958,3794307-3794444,3794540-3794622,
           3794738-3794825,3796147-3796344
          Length = 328

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +2

Query: 110 HNAKLPSNLSKNRYTDVLCYDHSRVLLSQ-TDPDDPTTDYINANYV 244
           + A+  +N  KNRY DV+ +D +RV L + T     + DYINA+++
Sbjct: 77  NEARNAANREKNRYIDVVPFDTTRVRLKRSTTSQTSSNDYINASFI 122


>02_04_0503 + 23526699-23527112
          Length = 137

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -2

Query: 106 GSDGRAG--PYLVVLCD-EAPAPHEPQAGQQPAG 14
           GS+GR G  P ++V+C  +AP+P  P  G   AG
Sbjct: 86  GSEGRGGKRPKILVVCSPQAPSPPHPVGGGGSAG 119


>02_03_0155 +
           15805683-15805743,15805824-15806105,15808293-15808959,
           15809440-15810490
          Length = 686

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 146 GSWIGCSATWRCGRFRRAGGTVSRRT 69
           GSW      WR G++RR  G V RRT
Sbjct: 250 GSWSVGRRRWRRGKWRRGLGGVGRRT 275


>07_03_0664 + 20462600-20463005,20464270-20464343
          Length = 159

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 80  IRSRPPVGTFHNAKLPSNLSKNRYTDVLCY 169
           +RS PPV TF +A  P    +    D+ CY
Sbjct: 20  MRSSPPVSTFSSALSPPKSPRPMADDIQCY 49


>01_05_0792 - 25275013-25275551,25275715-25275907
          Length = 243

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 316 RMVWEQGTVVIXMTTRVMERGRVKCGQ 396
           R++W++G + + M   V  R R  CGQ
Sbjct: 188 RLLWQRGALAVAMVAAVAGRRRGGCGQ 214


>01_07_0188 -
           41866689-41866763,41866889-41867155,41867277-41867722,
           41867945-41868033,41868279-41868368,41868661-41868739,
           41868979-41869042,41869597-41869684,41869776-41869836,
           41869906-41869969,41870134-41870188,41870275-41870346,
           41870469-41870551,41870629-41870724,41871279-41871383,
           41872159-41872227,41872470-41872561,41872667-41872886
          Length = 704

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +2

Query: 170 DHSRVLLSQTDPDDPTTDYINANYVDGYNRRTPTFVHRVL 289
           DH+     +  P D T D  N+  + GY  + P F  R +
Sbjct: 417 DHATRFWCRNRPGDLTRDKYNSGQMQGYGDQHPAFAGRAM 456


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,704,854
Number of Sequences: 37544
Number of extensions: 125795
Number of successful extensions: 404
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)