Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060484.seq
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g71860.2 68414.m08304 protein tyrosine phosphatase 1 (PTP1) i...    49   2e-06
At1g71860.1 68414.m08305 protein tyrosine phosphatase 1 (PTP1) i...    49   2e-06
At2g29510.1 68415.m03584 expressed protein                             29   2.5  
At5g35390.1 68418.m04206 leucine-rich repeat transmembrane prote...    27   7.7  

>At1g71860.2 68414.m08304 protein tyrosine phosphatase 1 (PTP1)
           identical to protein tyrosine phosphatase 1 GI:3170531
           from [Arabidopsis thaliana]; contains Pfam profile:
           PF00102 protein-tyrosine phosphatase
          Length = 277

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = +1

Query: 268 YICTQGPLPXTFGDFXRMVWEQGTVVIXMTTRVMERGR-VKCGQY 399
           +I TQGPLP T  DF  MV +Q   +I M TR+++  R VKCG Y
Sbjct: 134 FIATQGPLPHTMEDFWEMVIQQHCPIIVMLTRLVDNNRTVKCGDY 178



 Score = 33.9 bits (74), Expect = 0.067
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = +2

Query: 131 NLSKNRYTDVLCYDHSRVLLSQTDPDDPTTDYINANYV 244
           N+ KNRY+DV+ +D +R++L+    D     Y+NA+ +
Sbjct: 87  NVEKNRYSDVVPFDKNRIVLNPC-KDSSAKGYVNASLI 123


>At1g71860.1 68414.m08305 protein tyrosine phosphatase 1 (PTP1)
           identical to protein tyrosine phosphatase 1 GI:3170531
           from [Arabidopsis thaliana]; contains Pfam profile:
           PF00102 protein-tyrosine phosphatase
          Length = 340

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = +1

Query: 268 YICTQGPLPXTFGDFXRMVWEQGTVVIXMTTRVMERGR-VKCGQY 399
           +I TQGPLP T  DF  MV +Q   +I M TR+++  R VKCG Y
Sbjct: 134 FIATQGPLPHTMEDFWEMVIQQHCPIIVMLTRLVDNNRTVKCGDY 178



 Score = 33.9 bits (74), Expect = 0.067
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = +2

Query: 131 NLSKNRYTDVLCYDHSRVLLSQTDPDDPTTDYINANYV 244
           N+ KNRY+DV+ +D +R++L+    D     Y+NA+ +
Sbjct: 87  NVEKNRYSDVVPFDKNRIVLNPC-KDSSAKGYVNASLI 123


>At2g29510.1 68415.m03584 expressed protein
          Length = 839

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +2

Query: 101 GTFHNAKLPSNLSKN--RYTDVLCYDHSRVLLSQTDPDDPT-TDYINANYVDGYNRRTPT 271
           G FH     + + +N  + TDV     +R L S + PD P+ T  I+ N  + + ++   
Sbjct: 204 GQFHQTPRATAVQQNEKKDTDVKIVPKTRTLFSPSKPDSPSCTRIISKNLAEDFKKKGEK 263

Query: 272 FVHRV 286
              R+
Sbjct: 264 LEERI 268


>At5g35390.1 68418.m04206 leucine-rich repeat transmembrane protein
           kinase, putative receptor-like protein kinase PRK1,
           Lycopersicon esculentum, PIR:T07865
          Length = 657

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -2

Query: 115 VVEGSDGRAGPYLVVLCDEAPAPHEPQAGQQPAGVSR 5
           V EG+ G  G  L   CD     H PQ+  +P   SR
Sbjct: 218 VFEGNKGLYGKPLETECDSPYIEHPPQSEARPKSSSR 254


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,569,827
Number of Sequences: 28952
Number of extensions: 89758
Number of successful extensions: 317
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)