Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060483.seq
         (684 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    28   0.082
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    25   0.76 
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    23   3.1  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   4.1  
DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    21   9.4  

>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 27.9 bits (59), Expect = 0.082
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 52  YXIQEYKRVVSKVYKNQTW*TCXSNNLLQKLRPCAKMK 165
           Y    Y  VV+  YK +TW       LL+ L  CAK+K
Sbjct: 76  YCFNYYVIVVTTFYKRRTW-----TRLLKNLESCAKIK 108


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 554 SLAFFARWNCCVVA*NTISIXRPFFY 477
           ++ FF+ W C +V  N   I   F+Y
Sbjct: 42  AVTFFSAWICALVNYNVSEISENFYY 67


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +2

Query: 464 TEKMGKKMXXRSRSCFKRQRSNSSEQKKPDCGGYXRKF 577
           T+K G K   R     KR   N  E+K    G Y +K+
Sbjct: 81  TQKNGSKKIMRHLIDHKRDWWNELEEKYDKEGEYRKKY 118


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 515 RQRSNSSEQKKPDC 556
           +Q SN S   KPDC
Sbjct: 84  QQNSNYSSNSKPDC 97


>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
           protein 7 protein.
          Length = 127

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 441 ILCSFLITLKRWVKKWXXDRDRVSSD 518
           ILC+FL+ +     K+    D V  D
Sbjct: 8   ILCAFLVAVSAAENKYTNKYDNVDVD 33


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,015
Number of Sequences: 336
Number of extensions: 2438
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)