Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060483.seq
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha...    26   4.4  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    25   7.7  

>SPAC1142.06 |get3||GET complex ATPase subunit Get3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 7   LHPQTNCPGCWALKKYXIQEYKRVVSKVYKN 99
           L P T CP C A +K   Q+Y   + ++Y++
Sbjct: 262 LDPNTTCPQCMARRKMQ-QKYLAQIEELYED 291


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +1

Query: 25  CPGCWAL--KKYXIQEYKRVVSKVYKNQTW*TC 117
           C G  AL  K Y  +EY  V S VYK Q   TC
Sbjct: 781 CDGLVALVPKAYISEEYVPVPSAVYKPQQSVTC 813


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,301,673
Number of Sequences: 5004
Number of extensions: 38555
Number of successful extensions: 91
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)