Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060483.seq
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50110-3|CAA90445.2|  459|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U42436-4|AAF99896.2|  297|Caenorhabditis elegans Hypothetical pr...    28   7.1  

>Z50110-3|CAA90445.2|  459|Caenorhabditis elegans Hypothetical
           protein F18H3.4 protein.
          Length = 459

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 96  KSNMVNMXEQQSSTETAAVCKNEKLLNKLEXSSYNKSNMDQ 218
           K N+    EQ   TE  A+ +N+KLL  L   + ++  MDQ
Sbjct: 121 KRNLSARDEQALVTEIDALKRNKKLLESLAEITSHRKGMDQ 161


>U42436-4|AAF99896.2|  297|Caenorhabditis elegans Hypothetical
           protein C49H3.9 protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +1

Query: 13  PQTNCPGCWALKKYXIQEYKRVVSKVYKNQTW*TC 117
           PQ  C    +L KY   E    + K YK  TW  C
Sbjct: 35  PQKRCKKAASLHKYRDMETYHKIIKTYKAPTWYGC 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,874,031
Number of Sequences: 27780
Number of extensions: 224166
Number of successful extensions: 481
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)