Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060483.seq
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.7  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   2.7  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              22   4.7  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 490 RXIEIVFQATTQQFQRAKKARLRWL 564
           R I + +  T    +R KK RLRW+
Sbjct: 335 RKIFLKYLPTILMMRRPKKTRLRWM 359


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +3

Query: 513 SDNAAIPASKKSQTAVVTNANLAALKESAXLRDKFIXSFXSLXKGXIQLNNV 668
           S   +I  S K +T+   NA  + ++ES  + D F     +  +    LNN+
Sbjct: 543 SSGLSISDSTKPETSKGINAEPSNIEESNNMTDSFTRIANNTIQELYTLNNM 594


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 6   SSSTNELPRXLGIKKIYXPRIQAG 77
           ++  NE P   GIK+ Y P +  G
Sbjct: 166 NTGINEFPMMAGIKRTYEPGMICG 189


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = +3

Query: 159 NEKLLNKLEXSSYNKSNMDQLIAIVNXLEKKNLTIXST*XXXCRXNXKCPN 311
           NEK+ + +  +  N +  DQL+A  + +   N  I  +    C    K  N
Sbjct: 80  NEKISSDIVRAVLNDNEADQLLAECSPISDPNALIKISKILECFFKYKTIN 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,382
Number of Sequences: 438
Number of extensions: 2920
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)